Microsatellites /Tandem Repeats database

Genome: Clostridium phytofermentans ISDg

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
36845TAAATTATTTTATGATAAGTCATTATATTATTTTATGATAAGTCATTATATTATTTTATGAAAAGTCATDesign primers
65901AAGATTAATTAAAGGTTAATTAAAGGTTAATTADesign primers
112661GAAAAGATTATGGACAA-GAAAAGGTTATGGACAA-GAAAAGGTTATGGACAA-GAAAAGGTTATGGACAADesign primers
220168ATAGCTATGAA-TTAGCTATGAA-TTAGCTATGAADesign primers
453143GCAATAATAATAGTA-ACAATAATAATAGTA-ACAATAATAATAGTADesign primers
465147ATGATAAGAAATAATAAGAAATAATAAGAADesign primers
465303AATGCAAACAGCAAT-AATGCAAACAGCAAT-AATACAAACAGCAAT-AATACAAACAGCAATDesign primers
484984AATAAAGAATCGTGACAGGAATAAAGAATCGTAACAGGAATAAAGAATCGTGACAGGDesign primers
513487GTAAAACCTTAA-GTAAAACCTTAA-GTAAAACCTCAA-GTAAAACCTCAA-GTAAAACCTCAADesign primers
521061TAATGAAAATAGAAA-CAATGAAAATAGAAA-CAATGAAAATAGAAADesign primers
546523GGAACAAATAAAGCGGGAACATATAAAGCGGGAACATATAAAGCGDesign primers
546739AAATAGAACAAGAAGATATAGAACAAGAAGATATAGAACAAGAAGDesign primers
595855GTATCAAAAAGCAAG-ATATCAAAAAGCAAG-ATATCAAAAAGCAAG-ATATCAAAAAGCAAG-ATATCAAAAAGCAAG-ATATCAAAAAGCAAG-ATATCAAAAAGCAAGDesign primers
699437TAATTATAGCCAGGCATTCAATC-TTATTATAGCCAAGCATTCAATC-TTATTATAGCCAAGCATTCAATC-TTATTATAGCCAAGCATTCAATCDesign primers
824866ATACCAAAAAAGATAACAAAAAAGATACCAATAAAGATACCAATAAAGDesign primers
893357GAGTGAAGGATAATATGAGTAAAGGATAATATGAGTAAAGGATAATATDesign primers
893406AGTAAAGGATAGTAAGAGTAAAGGATAATAAGAGTAAAGGATAATAAGDesign primers
921914AAAAGAGATACAAGAAAGAGATACAAGAAAGAGATACAADesign primers
930920TTTCTGTCTTTACGGCAGCAGTTTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGCAGCAGDesign primers
930984CTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGCAGCAGTCTCTATCGTTACGGCAGCAGTCTCTATCGTTACGGCAGCAGTCTCTGTCTTTACGGCAGCAGTCTCTATCGTTACGGCAGCGGTDesign primers
931118TTACGGCAACAGTCTCTATCGTTACGGCAGCAGTCTCTATCGTTACGGCAGCAGTCTCTGTCGTTACGGCAGCAGTCTCTGTCGDesign primers
932098CCGAAGTCATTTCTGCCAAAGTCATTTCTGCCGAAGTCATTTCTGCCAAAGTCATTTCTGDesign primers
932176AAGTCATCTCTCCCG-AAGTCATCTCTGCCG-AAGTCATCTCTCCCG-AAGTCATCTCTCCCG-AAGTCATCTCTACCG-AAGTCATCTCTCCCGDesign primers
932502ACGATCACAACCACGTTCACGATTACACTCACAACCACGTTCACGATTACACTCACAACCACGTTCACGATTDesign primers
935384AGAAATGGATCATGGCTGCATGAA-AGAAATGGACCGTGGCTGCATGAA-AGAAATGGACCGTGGCTGCATGAA-AGAAATGGATCATGGCTGCATGAA-AGAAATGGATCATGGCTGCATGAADesign primers
988326TGATCAAGTAAAG-TGATTAAGTAAAG-TGATTAAGTAAAG-TGATTAAGTAAAG-TGATTAAGTAAAG-TGATTAAGTAAAGDesign primers
1052248TATTGAGTAAAAATACTATGGAGTAAAAATACTATGGAGTAAAAATACDesign primers
1053194AGAAAGTAATAGTAAA-AGAAAGTAATAGTAAA-AGAAAGTAATTGTAAA-AGAAAGTAATTGTAAADesign primers
1060604AGGAGTACTAGTTGGAACAGGAGTACTAGTTGGAAAAGGAGTACTTGTTGGAACDesign primers
1080274CA-GT-CT-CT-AT-CT-CT-GT-CT-CT-AT-CT-CT-GT-CT-CT-AT-CTDesign primers
1082330GGGCATAAAATATA-AGGCATAAAATATA-AGGCATAAAATATA-AGGCATAAAATATA-AGGCATAAAATATADesign primers
1139305TGCATGTTATTCATTCCT-TGCATGTTATTCATTCCT-TGCATATTATTCATTCCTDesign primers
1259353TGTATAAGTTTAATATATAAGTTTAATATATAAGTTTAADesign primers
1369588GAAGAACAAATAGAGGAAAAACAAATAGAGGAAGAACAAATAGAGGAAGAACAAATAGAGDesign primers
1429230AAAAATTATGGGATAGAAAAATTATGGAATAGAAAAATTATGGGATAGDesign primers
1433915CTTTAAGATAATAAATATCTAGCTACTTTAGGAAAATAAATATCTAGCTACTTTAAGATAATAAATATCTAGCTADesign primers
1520759AGAAAGACAAAC-ATAAAGACAAAC-ATAAAAACAAAC-ATAAAGACAAAC-AGAAAGACAAAC-ATAAAGACAAACDesign primers
1542116CTAGAAGATAAATCA-CAAGAAGATAAATCA-CAAGAAGATAAATCA-CAAGAAGATAAATCA-CAAGAAGATAAATCA-CAAGAAGATAAATCA-CAAGAAGATAAATCADesign primers
1583959AAAAAAGATTAGTAC-AAGAAAGATTAGTAC-AAGAAAGATTAGTAC-AAGAAAGATTAGTAC-AAGAAAGATTAGTAC-AAGAAAGATTAGTACDesign primers
1584052AAGATTAGTACAAAAAAGATTAGTACAAGAAAGATTAGTACAAGADesign primers
1617918CGAAATCCTAGATATTACTTTGAAATCCTAGATATTACTATAAAATCCTAGATATTACTTDesign primers
1636361AATAGA-AATAGA-AATAGA-AATAGA-AATAGADesign primers
1685084AATAATGTCTGTACTGTAGTAATGTCTGTACTGTAGTAATGTCTGTACTGTDesign primers
1685512TCAAAATCATCGTCAAATTCATCGTCAAAATCATCTDesign primers
1704106AGAGCGATTGGTAGAACGATTGGTAGAACGATTGGTDesign primers
1707355AGAAGTAATAA-AGAAGTGAAAA-AGAAGTGAAAA-AGAAGTGAAAA-AGAAGTGAAAA-AGAAGTGAAAADesign primers
1723670AGCATAATGTATTTAGAAATATTTTAGAATAATGTATTTAGAAATATTTTAGTATAATGTATTAAGAAATATTTTAGTATAATGTATTTAGAAATATTTTDesign primers
1850393AGAAATAAAAG-ATAATTAAAAG-ATAAATAAAAG-ATAAATAAAAG-ATAAATAAAAG-ATAAATAAAAG-ATAAATAAAAG-ATAAATAAAAGDesign primers
1884778GAAGAAGAGATAGAT-AAAGAAGAGATAGAT-AAAGAAGAGATAGAT-AAAGAAGAGATAGATDesign primers
1958989CAATAGAGGAGT-CAATAGAGGAGT-CAAAAGAGGAGTDesign primers
1959036TCAAAAGAGGAATCAAAAGTGGAATTAAAAGAGGAATCAAAAGGGGAADesign primers
1962813TATGAAATAAATTATAAGATAGATGCGAAATAAATTATAAGATAGATGCGAAATAAATTATAAGATAGADesign primers
2027017CAATCATAATTAATCATAGGCTAACAATCGTAATTAATCATAGGCTAACAATTGTAATTAATCATAGGCTAADesign primers
2029216CAGTCTCTACGGCAATCACAGTCTCTACGGAAATCACAGTCTCTACGGCAATCGDesign primers
2079140GCACCAGTA-GCACCAGTA-GCACCAGTADesign primers
2258851CAAATAGTAAGGATAAAACTG-CAAATAGTAAGGATAAAACTG-CAAACAGTAAAGATAAAACTGDesign primers
2266093AAAAGCATGTAAAAACAAAAAGCATGTAAAGACAAAAAGCATGTAAAGACADesign primers
2266152TAAATACAACAGCTTGTATATACAACAGCTTGTATATACAACAGCTTGDesign primers
2270837ATATCATTGGCTTGTAGATATCATTGGTTTGTAGATATCATTGGTTTGTAGDesign primers
2275341AATCAATA-AATCAATA-AATCAATADesign primers
2285786CATTCCACT-CATTCCACT-CATTCCACTDesign primers
2300484AAAGGAACTGATTACATAAATAAAAGAACTAATTACATAAATAAAAGAACTGATTACATAAGTDesign primers
2329096GTAACTCAA-GTAACTCAA-GTAACTCAADesign primers
2336439AAGTTGGTAGTAAAA-AAGTTGGTAGTAAAA-AAGATGGTAGTAAAADesign primers
2336485GAAGATAGTAAAAAGAAGGTAGTAAAAAGAAGGTAGTAAAAADesign primers
2337364GGGATGATCATATAAATAAAAGGGATGATCAGATAAGTAAAAGGGATGATCATATAAATAAAADesign primers
2337676TAAATCAACCAATAAATCAACCAAAAAAGCAACCAATAAATCAACCAATGAATCAGCCAATAAATCAACCAADesign primers
2344935AAAATATTGCTATCTA-GAAATATTGCTATCTA-GAAATATTGCTATCTADesign primers
2345017AATATTGTTATCTAGGCATATTGTTATCTAGGAATATTGTTATCTAGGAATATTGTTATCTAGAAATATTGTTATCTAGATATATTGTTATCTAGGDesign primers
2374950GATATAGGAAATTCCTATA-AATATAGGAAATTCCTATA-AATATAGGAAATTCCTATADesign primers
2398441TAAGATAAAATATAAAATAAAATATAATATAAAATADesign primers
2471065ATCGATAAAAAGAAAACTGTTATTGATAAAAAGAAAACTGTCATTGATAAAAGGAAAACTGTTDesign primers
2554995GAGAGTGTATTAGAGGGGAGTGTATTAGAGGGGAGTGTATTAGAGDesign primers
2593134TATTTATTTTGTTTCTATTAATCTTTTATTTTGTTTCTATTAATCATTTATTCTGTTTCTATTAATDesign primers
2608116CTTTTTATAATCCTTTTGATAATCCTTTTGATAATCDesign primers
2608153TTTTATAATCCTTTTGATAATCCTTTTGATAATCCTDesign primers
2619206GATGAGTAAAGAAACTAAAACAAAGGTGAGTAAAGAAATTAAAACAAAGGTGAGTAAAGAAATTAAAACAAADesign primers
2813978TTTATATTTTATATATTTATGTTTTATATATTTATGTTTTATATADesign primers
2855441AGGAGATACTATTCGCATCCT-ATGATATACTATTCGCATCCT-ATGATATACTATTCGCATCCT-ATGATATACTATTCGCATCCTDesign primers
2875692TATCTAATCTCTTTTCTATTATCTCATCTCTTTTCTATTATCTCATCTCTTTTCTATDesign primers
2959126TCTCTTTTATA-TCTCTTTTATA-TCACTTTTATA-ACTCTTTTATADesign primers
2970204TTTATTAACTCTA-TTTATTAACTCTA-TTTGTTAACTCTADesign primers
3033451GTATTT-GTATTT-GTATTT-GTATTTDesign primers
3065128CTCATTTCTTCGT-TTCATTTCTTCGT-TTCATTTCTTCGT-TTCATTTCTTCGTDesign primers
3126050TCTATTTCTCATCTGTTTCTCATCTGTTTCTCADesign primers
3193635TATTTTACCTAATATTTTTTACCTAATATTTTTTACCTAATADesign primers
3237322TTCCTTTATAGA-TTCCTTTATAGA-TTCTTTTATAGA-TTCTTTTATAGA-TTCTTTTATAGADesign primers
3245077TAAAGTTTTTATAAAGTTTTAATAAAGTTTTAADesign primers
3384214ATTAAGTTATTATAAGATATATCCT-ATTTAGTTATTATAAAATATATCCT-ATTTAGTTATTATAAAATATATCCT-ATTTAGTTATTATAAAATATATCCT-ATTTAGTTATTATAAAATATATCCTDesign primers
3384340TTTAGTTATTATAAAATATATCTTA-TTTAGTTATTATAAAATATATCCTA-TTTAGTTATTATAAAATATATCCTA-TTTAGTTATTATAAAATATATCTTADesign primers
3385032ACTTAGTTTTAATCGTATTTTTCACTTGGTTTTAATCGTATATTTCACTTGGTTTTAATCGTATATTTCDesign primers
3455210TTCATTGGAAATACTTTTTCATTGAAAATACTTTTTCATTGAAAATACTTTDesign primers
3462700GGTGGTACTGGCTTTGGTGGTGCTGGCTTTGGTGGTGCTGGCTTTDesign primers
3488517TTCCTATTTTTATCTACTAATCTATCCTATTTCTATCTACTAATCTATCCTATTTTTATCTACTAATCTDesign primers
3500099TATATATC-TATATATC-TATATATCDesign primers
3500185CTATCTATATACCTT-ATATCTATATACCTT-ATATCTATATACCTTDesign primers
3542736TTTCCTTATGCGTATTACGCACTTTCTTTATGCGTATTACGCACTTTCTTTATGCATATTACGCACTTTCTTTATGCATATTACGCACDesign primers
3552573TAGCCTTTTTAT-TAGCCTTTTTAT-TGGCCTTTTTATDesign primers
3552827TTATCTTTATCCTTTGATACT-TTATCTTTATCACTTGATACT-TTATCTTTATCACTTGATACT-TTATCTTTATCACTTGATACT-TTATCTTTATCACTTGATACT-TTATCTTTATCACTTGATACTDesign primers
3575644TCTCGATTCTTCTATTTTCTTGATTCTTCTATTTTCTTGATTCTTCTATTTDesign primers
3669542TTTCTA-TTTCTA-TTTCTA-TTTCTADesign primers
3680958ACATATTCTATTGAAGCTCCTCGCACATAATCTATTGAAGCTCCTCGCACATAATCCATTGAAGCTCCTCGCACATAATCCATTGAAGCTCCTCGCDesign primers
3753295AAGAAAGCAAACTCATTCAAT-AAGAAAGCGGACTCATTCAAT-AAGAAAGCGGACTCATTCAAT-AAGAAAGCGGACTCATTCAATDesign primers
3895558TTTTGATATGCTTGA-TTTTGATGTGCTTGA-TTTTGATACGCTTGA-TTTTGATACGCTTGA-TTTTGATACGCTTGA-TTTTGATACGCTTGADesign primers
3897299TTATATTAATCTTTTCATATTAATCTTTTCATATTAATCTTTDesign primers
3907496AAAATAAACAATAGAAAATATACAATAGAAAATAAGCAATAGDesign primers
3956548ATCTAATTA-ATCTAATTA-ATCTAATTADesign primers
3961647TCATCATTTTTTGACTCATCATTTCTTGACTCATCATTTCTTGACDesign primers
3969830GGACCTACCGGACCTACCGGACCTACTGGACCTACCGGACATACCGGACCTACCDesign primers
3982017CTTCACAAATGCTTTCCTTG-TCTCACAAATGCTTTCCTTG-TCTCACAAATGCTTTCCTTGDesign primers
3997603GTTCCTTTGATATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAA-GTTCCTCTGTTATGAAAAGCTTAADesign primers
4065245TTGTAACCCTATTTGTAACCATATTTGTAACCATATDesign primers
4123131CACATTTTATA-CACATTTTATA-CACATTTAATADesign primers
4160534GTGAAAGATTGTTCCTTC-GTGAAGGATTGTTCCTTC-GTGAAGGATTGTTCCTTC-GTGAAGGATTGTTCCTTCDesign primers
4196142TTATTATTTTTTTATTATTTCTTTATTATTATTDesign primers
4203736TGTTCTCCATCTGAT-TGTTCTCCATCTGAT-TGTTCTCCGTCTGATDesign primers
4227121CTTCCTTTATCT-CTTCCTTTATCT-CTTCCTTTATTT-CTCCCTTTATCTDesign primers
4227180TCTTCCTTTATCTCTTTCTTTATCTCTTCCTTTATTDesign primers
4227217CTCCCTTTATTTCTCCCTTTATCTCTTCCTTTATTTDesign primers
4227254TTCCTTTATCTCTTTCTTTATCTCTTCCTTTATTTCDesign primers
4299602TTGTTTTATTATTTT-TTGTTTTATTATTTT-TTGTTTTATTGTTTTDesign primers
4374561ATTTTAGTAATTCAAATGATAATCAATTCAGTAATTCAAATGATAATCAACTTAGTAATTCAAATGATAATCDesign primers
4376184CCCCAACAGATG-CTCCAACAGATG-CTCCAACAGATG-CTCCAACAGATGDesign primers
4439977TTCATTTTTCGCTTCATTTTTTGCTTCATTTTTTGCDesign primers
4664372ATATGTATGTGTACTTGATATATATGTGTACTTGATATATATGTGTACTTGACATGTATGTGTACTTGDesign primers
4680156TTTCTAATCTCTTCTTT-TTTCTAATCTCTTCTTT-TTTCTATTCTCTTCTTTDesign primers
4719225TTCTTTCTTGAAAGTGGTT-TTCTTTCTTGAAAGTGGTT-TTCTTTCTTGAAAGTGATT-TTCTTTCTTGAAAGTGATTDesign primers
4723578ATATTTCATCTA-ATATTTCATCCA-ATATTTCATCCA-ATATTTCATCCADesign primers
4825608ATCACTTATCACTCATTACTTATCACTCATTACTTATCACTCDesign primers
4825657ATTGCTC-TTTGCTC-CTTGCTC-TTTGCTC-TTTGCTC-TTTGCTC-TTTGCTC-TTTGCTCDesign primers
4829352TTGACCTTACTCTGCTCTTATTTGACCTTACTCTACTCTTATTTGATCTTACTCTGTTCTTATDesign primers

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