Microsatellites /Tandem Repeats database

Genome: Clostridium phytofermentans ISDg

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
112668TTATGGACAAGAAAAGG-TTATGGACAAGAAAAGG-TTATGGACAAGAAAAGGDesign primers
220169TAGCTATGAAT-TAGCTATGAAT-TAGCTATGAATDesign primers
465150ATAAGAAATA-ATAAGAAATA-ATAAGAAATADesign primers
465322CAAACAGCAATAATA-CAAACAGCAATAATA-CAAACAGCAATAATADesign primers
513509AAGTAAAACCTC-AAGTAAAACCTC-AAGTAAAACCTCDesign primers
521062AATGAAAATAGAAAC-AATGAAAATAGAAAC-AATGAAAATAGAAACDesign primers
546741ATAGAACAAGAAGAT-ATAGAACAAGAAGAT-ATAGAACAAGAAGATDesign primers
595856TATCAAAAAGCAAGA-TATCAAAAAGCAAGA-TATCAAAAAGCAAGA-TATCAAAAAGCAAGA-TATCAAAAAGCAAGA-TATCAAAAAGCAAGA-TATCAAAAAGCAAGADesign primers
699450GCATTCAATCTTATTATAGCCAA-GCATTCAATCTTATTATAGCCAA-GCATTCAATCTTATTATAGCCAA-GCATTCAATCTTATTATAGCCAADesign primers
824886AAAGATACCAAT-AAAGATACCAAT-AAAGATACCAATDesign primers
893362AAGGATAATATGAGTA-AAGGATAATATGAGTA-AAGGATAATATGAGTADesign primers
921915AAAGAGATACAAG-AAAGAGATACAAG-AAAGAGATACAAGDesign primers
932506TCACAACCACGTTCACGATTACAC-TCACAACCACGTTCACGATTACAC-TCACAACCACGTTCACGATTACACDesign primers
988331AAGTAAAGTGATT-AAGTAAAGTGATT-AAGTAAAGTGATT-AAGTAAAGTGATT-AAGTAAAGTGATT-AAGTAAAGTGATTDesign primers
1052252GAGTAAAAATACTATG-GAGTAAAAATACTATG-GAGTAAAAATACTATGDesign primers
1080276GTCTCTATCTCT-GTCTCTATCTCT-GTCTCTATCTCTDesign primers
1082331GGCATAAAATATAA-GGCATAAAATATAA-GGCATAAAATATAA-GGCATAAAATATAA-GGCATAAAATATAADesign primers
1369607AACAAATAGAGGAAG-AACAAATAGAGGAAG-AACAAATAGAGGAAGDesign primers
1542118AGAAGATAAATCACA-AGAAGATAAATCACA-AGAAGATAAATCACA-AGAAGATAAATCACA-AGAAGATAAATCACA-AGAAGATAAATCACA-AGAAGATAAATCACADesign primers
1583962AAAGATTAGTACAAG-AAAGATTAGTACAAG-AAAGATTAGTACAAG-AAAGATTAGTACAAG-AAAGATTAGTACAAG-AAAGATTAGTACAAGDesign primers
1636361AATAGA-AATAGA-AATAGA-AATAGA-AATAGADesign primers
1685086TAATGTCTGTACTGTAG-TAATGTCTGTACTGTAG-TAATGTCTGTACTGTAGDesign primers
1707364AAAGAAGTGAA-AAAGAAGTGAA-AAAGAAGTGAA-AAAGAAGTGAA-AAAGAAGTGAA-AAAGAAGTGAADesign primers
1850409TAAAAGATAAA-TAAAAGATAAA-TAAAAGATAAA-TAAAAGATAAA-TAAAAGATAAA-TAAAAGATAAA-TAAAAGATAAADesign primers
1884779AAGAAGAGATAGATA-AAGAAGAGATAGATA-AAGAAGAGATAGATA-AAGAAGAGATAGATADesign primers
1962816GAAATAAATTATAAGATAGATGC-GAAATAAATTATAAGATAGATGC-GAAATAAATTATAAGATAGATGCDesign primers
2079140GCACCAGTA-GCACCAGTA-GCACCAGTADesign primers
2266155ATACAACAGCTTGTAT-ATACAACAGCTTGTAT-ATACAACAGCTTGTATDesign primers
2275341AATCAATA-AATCAATA-AATCAATADesign primers
2285786CATTCCACT-CATTCCACT-CATTCCACTDesign primers
2329096GTAACTCAA-GTAACTCAA-GTAACTCAADesign primers
2344936AAATATTGCTATCTAG-AAATATTGCTATCTAG-AAATATTGCTATCTAGDesign primers
2374951ATATAGGAAATTCCTATAA-ATATAGGAAATTCCTATAA-ATATAGGAAATTCCTATAADesign primers
2554997GAGTGTATTAGAGGG-GAGTGTATTAGAGGG-GAGTGTATTAGAGGGDesign primers
2608157ATAATCCTTTTG-ATAATCCTTTTG-ATAATCCTTTTGDesign primers
2813984TTTTATATATTTATGTTTTATATATTTATGTTTTATATATTTATGDesign primers
2855446ATACTATTCGCATCCTATGAT-ATACTATTCGCATCCTATGAT-ATACTATTCGCATCCTATGAT-ATACTATTCGCATCCTATGATDesign primers
2875698ATCTCTTTTCTATTATCTC-ATCTCTTTTCTATTATCTC-ATCTCTTTTCTATTATCTCDesign primers
3033451GTATTT-GTATTT-GTATTT-GTATTTDesign primers
3065129TCATTTCTTCGTT-TCATTTCTTCGTT-TCATTTCTTCGTT-TCATTTCTTCGTTDesign primers
3193637TTTTACCTAATATT-TTTTACCTAATATT-TTTTACCTAATATTDesign primers
3237338TTTATAGATTCT-TTTATAGATTCT-TTTATAGATTCT-TTTATAGATTCTDesign primers
3384230ATATATCCTATTTAGTTATTATAAA-ATATATCCTATTTAGTTATTATAAA-ATATATCCTATTTAGTTATTATAAA-ATATATCCTATTTAGTTATTATAAA-ATATATCCTATTTAGTTATTATAAADesign primers
3462707CTGGCTTTGGTGGTG-CTGGCTTTGGTGGTG-CTGGCTTTGGTGGTGDesign primers
3500099TATATATC-TATATATC-TATATATCDesign primers
3500186TATCTATATACCTTA-TATCTATATACCTTA-TATCTATATACCTTADesign primers
3552840TTGATACTTTATCTTTATCAC-TTGATACTTTATCTTTATCAC-TTGATACTTTATCTTTATCAC-TTGATACTTTATCTTTATCAC-TTGATACTTTATCTTTATCACDesign primers
3669542TTTCTA-TTTCTA-TTTCTA-TTTCTADesign primers
3680991ATTGAAGCTCCTCGCACATAATCC-ATTGAAGCTCCTCGCACATAATCC-ATTGAAGCTCCTCGCACATAATCCDesign primers
3753305ACTCATTCAATAAGAAAGCGG-ACTCATTCAATAAGAAAGCGG-ACTCATTCAATAAGAAAGCGGDesign primers
3895582GCTTGATTTTGATAC-GCTTGATTTTGATAC-GCTTGATTTTGATAC-GCTTGATTTTGATACDesign primers
3897301ATATTAATCTTTTC-ATATTAATCTTTTC-ATATTAATCTTTTCDesign primers
3956548ATCTAATTA-ATCTAATTA-ATCTAATTADesign primers
3997613TATGAAAAGCTTAAGTTCCTCTGT-TATGAAAAGCTTAAGTTCCTCTGT-TATGAAAAGCTTAAGTTCCTCTGT-TATGAAAAGCTTAAGTTCCTCTGT-TATGAAAAGCTTAAGTTCCTCTGT-TATGAAAAGCTTAAGTTCCTCTGTDesign primers
4160540GATTGTTCCTTCGTGAAG-GATTGTTCCTTCGTGAAG-GATTGTTCCTTCGTGAAGDesign primers
4376186CCAACAGATGCT-CCAACAGATGCT-CCAACAGATGCTDesign primers
4723589AATATTTCATCC-AATATTTCATCC-AATATTTCATCCDesign primers
4825672TTGCTCT-TTGCTCT-TTGCTCT-TTGCTCT-TTGCTCT-TTGCTCTDesign primers

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