Microsatellites /Tandem Repeats database

Genome: Shewanella baltica OS185

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
167411AATACAAAA-AATACAAAA-AATACAAAA-AATACAAAA-AATACAAAADesign primers
485538TTCGCTAAGA-CTCGCTAAGA-CTCGCTAAGADesign primers
573137TAAGCCAACTGAAAT-TAAGCCAACTGAAAT-TAAGTCAACTGAAAT-TAAGCCAACTGAAGTDesign primers
629540CTGATAA-CTGATAA-CTGATAA-CTGATAADesign primers
629569TGAGAGT-TGAGAGT-TGAGAGT-TGAGAGTDesign primers
704204TAATGCTTTAAATAATGTTTTAAATAATGCTTTAAADesign primers
714427TCGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTG-TTGTTTGDesign primers
717181TAAGCCCTTTATA-TAAGCCCTTTATA-TAAGCCCTTTTTADesign primers
717954TCTGTT-TCTGTT-TCTGTT-TCTGTTDesign primers
766459TGTTCAGCTTA-GGTTCAGCTTA-GGTTCAGCTTADesign primers
994539GATGCTCG-AATGCTCG-AATGCTCG-AATGCTCG-AATGCTCG-AATGCTCGDesign primers
1172803AACACAGAC-AACACAGAC-AACACAGAC-AACACAGACDesign primers
1181606AGCAGAGCTAAAACAGCAGAACTAAAACAGCAGAGCTAAAAC-AGCAGAGCTAAAACAGCAGAACTAAAACAGCAGAGCTAAAAC-AGCAGAGCTAAAACAGCAGAGCTAAAACAGCAGAGCTAAAACDesign primers
1275329TAGCATC-TAGCATC-TAGCATC-TAGCATCDesign primers
1279260GAAAGCTAAGCAC-AAAAGCTAAGCAC-AAAAGCTAAGCACDesign primers
1296191TACTCATC-AGCTCATC-AGCTCATC-AGCTCATC-AGCTCATC-AGCTCATC-AGCTCATC-AGCTCATC-AGCTCATCDesign primers
1308953TGGTTA-GGGTTA-GGGTTA-GGGTTA-GGGTTA-GGGTTADesign primers
1620092CACTAATACGCCATTAATACGCCATTAATACGCDesign primers
1625607TAATACGG-TAATACGG-TAATACGG-TAATACGGDesign primers
1682704TGGCGATAGATACTGGCGATAGATAATGGTGATAGATACDesign primers
1696002GGAACAA-GGAACAA-GGAACAA-GGAACAADesign primers
1794547TAGCGACTCAATATAGTGACTCAATATAGCGACTCAATADesign primers
1877138ATTAGTGCC-ATTAGTGCC-ATTAGTGCCDesign primers
1922115TTTGATAGAATTGGTTTGATTGAATTGGTTTGATTGAATTGGDesign primers
1926913GCAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAAC-TTAGAACDesign primers
2050633AAGAAAGT-AAGAAAGT-AAGAAAGT-AAGAAAGT-AAGAAAGTDesign primers
2125620CGCTTGATTGCCACGCTTGATTGCTACGCTTGAGTGCCADesign primers
2142270TGAGTTGGTTGTGAGTTAGTTGTGAGTTGGTTTDesign primers
2164055AAATCAC-CAATCAC-CAATCAC-CAATCAC-CAATCAC-CAATCACDesign primers
2224550CACCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTG-TGCCTGAGGTTGDesign primers
2412223TCGCTATGAACTAG-TAGCTATGAACTAG-TAGCTATGAACTAG-TAGCTATGAACTAGDesign primers
2473967TCATTAACG-TCATTAACG-TCATTAACGDesign primers
2625327AAACATTTTAAAG-AAGCATTTTAAAG-AAGCATTTTAAAG-AAGCATTTTAAAG-AAGCATTTTAAAG-AAGCATTTTAAAGDesign primers
2690021GTGCTC-ATGCTC-ATGCTC-ATGCTC-ATGCTC-ATGCTCDesign primers
2764430AGTGCTT-AGAGCTT-AGAGCTT-AGAGCTT-AGAGCTT-AGAGCTT-AGAGCTT-AGAGCTTDesign primers
2766013ATTTCCAGA-ATTTCCAGA-ATTTCCAGADesign primers
2798128ACCTAACTCTAAACTAACTCTAAACTAACTCTADesign primers
3015666GCTAAG-GATAAG-GATAAG-GATAAG-GATAAG-GATAAGDesign primers
3193201ATGAAATCAGA-GTGAAATCAGA-GTGAAATCAGADesign primers
3261854CAATCCACTTTTGTGCCATCCACTTTTGTGCCATCCACTTTTGTGDesign primers
3284747GCGCTAAC-GCGCTAAC-GCGCTAACDesign primers
3376028CTCTTCGTTTGCTCTTTGTTTGCTCTTTGTTTGDesign primers
3438266AGATAG-AGATAG-AGATAG-AGATAGDesign primers
3491827GACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGC-AACGCAGGCDesign primers
3662786GTACTGAGTACTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATTGAGTATTGADesign primers
3680013AGTGAAATCAAGAGTGAAATCGAGAGTGAAATCAAADesign primers
3688960TAAAGCGATTTAGAGCGATTTAGAGCGATTDesign primers
3746008TAAGCACTAACTGTAAGCATTAACTGTAAGCACTAAATGDesign primers
3758171TAAAAAA-TAAAAAA-TAAAAAA-TAAAAAA-TAAAAAADesign primers
3758207AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAAT-AAACAATDesign primers
3815591TCAGAG-TCATAG-TCATAG-TCATAG-TCATAG-TCATAG-TCATAG-TCATAG-TCATAG-TCATAGDesign primers
4008965ATTTCAACAACTCATTTCAACAAGTCATTTCAACAACTGDesign primers
4089141ATTCTTAAGCACGA-ATTCTTAAGCACGA-ATTCTTAAGCACTADesign primers
4120965TTGCATT-TAGCATT-TAGCATT-TAGCATT-TAGCATT-TAGCATTDesign primers
4215548GTTATCT-GTTATCT-GTTATCT-GTTATCT-GTTATCTDesign primers
4276010AATGCTAGATGCTA-GATGCTAGATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTA-AATGCTAAATGCTADesign primers
4838391ACTTAT-GCTTAT-GCTTAT-GCTTAT-GCTTAT-GCTTATDesign primers
4841746AAAAAGGATAGTAAAAAGGATTGTAAAAAGGATTGTDesign primers
5142093CCAGTTCCACCACCTGTACCTGTTCCACCACCTGTACCTGTTCCACCACCTGTADesign primers
5142150GTTCCACCGCCTGTGCCA-GTTCCGCCGCCTGTGCCA-GTTCCACCACCTGTGCCA-GTTCCACCACCTGTGCCA-GTTCCACCACCTGTGCCADesign primers

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