Microsatellites /Tandem Repeats database

Genome: Haemophilus influenzae PittGG

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
15822ACAA-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
44501ACAA-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
65223GAAATGTAAAGATTTGTAAAGAAATGTAAADesign primers
101304TTTTTGT-TGGTTGT-TGGTTGT-TGGTTGT-TGGTTGT-TGGTTGT-TGGTTGT-TGGTTGTDesign primers
116446ATAATTGTCTATAATTAACTTTAATTGTCTDesign primers
161342CCTAGTGCAAATTTTTCACTACCTAGTGAAATATTTTCACCACCCAGTGCAAAATTTTCACTADesign primers
199850GCAT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCT-TGCTDesign primers
227146TATTTTCAG-AATTTTCAG-AATTTTCAGDesign primers
277511TTGTTTTTCTACCGC-ACTTTTTTCTACCGC-ACTTTTTTCTACCGCDesign primers
316843CACCGAAAATATCGCCAAAAATATCGCCGAACATATDesign primers
361335TCTATATCTATTTCAATATCTTTADesign primers
471081AAA-ATA-ATA-ATA-ATA-ATA-ATA-ATADesign primers
519585AAAATAAAAAGAAAAATCAAAACADesign primers
582743AAATAAACTAAAATAAAATAAAATTAAATTDesign primers
590321AAACAT-GATCAT-AAACAC-GACCAT-GACCAT-GATCATDesign primers
719099CGTACTGGTCGTGCTGGTCGTTCTGGTDesign primers
755310AAATATTAATAAATTTTATTAAATATAGATDesign primers
756466TTTACAGGA-ATTACAGGA-ATTACAGGADesign primers
756570ACAGGAATTTTTTAGGAATTTTACAGGAATTTTDesign primers
767976TATT-CATG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTG-TCTGDesign primers
775366GGTCAGGTGGTAAAAGACCGTCTGGTGCTAAAAGACGGTCAGGAGCTAAAAGAADesign primers
858171AGAC-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
861723GGATTT-GGCTTA-GGCTTA-GGCTTA-GGCTTA-GGCTTADesign primers
927986TCTGCATCAGCTTTTGCTTTTGCCTCTGCTGCCGCTTTCGCTTTTGCCTCCGCTTCAGCTTTTGCTTTAGCCTCAGCTTCAGCCTTTGCTTTAGCCDesign primers
928101CAGCTTTTGCTTTTGCCTCAGCCTCAGCTTTAGCTTTCGCCTCAGCTGCCGCTTTCGCTTTTGCCTCCGCTTDesign primers
938094AACA-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGC-TTGCDesign primers
967589TGTAAC-CATAAC-CATAAC-CATAAC-CATAAC-CATAACDesign primers
1001216CTCG-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGC-AAGCDesign primers
1005234TAAAATCAAAATTAAAAGTAAAATDesign primers
1035485TTCAAAATTTTTTAAAAATTTTCAAAATAADesign primers
1074001GTCTCAAATTTAGGCTCGAATTTAGGTTCAAATTTADesign primers
1097025GGAG-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
1173879CTAT-TTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTGDesign primers
1178992CAGCAGCGGCAGCAGTAGCAGCAGDesign primers
1204386CTAT-CTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTGDesign primers
1259121CTAT-TTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTG-GTTGDesign primers
1271035TTTTAAGTTTAATTTTAAATTTAATTTTATDesign primers
1349253CTTG-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAA-GCAADesign primers
1447445AGGC-TTTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTG-ATTGDesign primers
1453479CACCTTGTT-TTTCTTGTT-TTTCTTGTT-TTTCTTGTT-TTTCTTGTT-TTTCTTGTTDesign primers
1589686TTTCTGCATTGGTTTTTGCATCGGTTTTTGCATCGGDesign primers
1589726TGTATTGGTTGTTGTACTGGCTGTTGCATTGGTTGTDesign primers
1645930TGCCATTGCCGTTGCCGTTGCTATDesign primers
1724749TTTGTGGAGATTTTTAGAGATTTTTAGAGADesign primers
1846051GGCTTTAGCCCACCATTTTTAT-TCATTTAGCCCACCATTTTTAT-TCATTTAGCCCACCGTTTTTATDesign primers

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