Microsatellites /Tandem Repeats database

Genome: Vibrio cholerae O395 chromosome 1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
566246TTTTGAT-TTTTGAT-TTTTGAT-TTTTGAT-TTTTGAT-TTTTGAT-TTTTGATDesign primers
704426TTGCGGATGTTA-TTGCGGATGTTA-TTGCGGATGTTA-TTGCGGATGTTA-TTGCGGATGTTA-TTGCGGATGTTADesign primers
796066GTAAGTCAG-GTAAGTCAG-GTAAGTCAG-GTAAGTCAG-GTAAGTCAGDesign primers
922076TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGG-TTCTGGDesign primers
1073061ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCA-ACAGCADesign primers

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