Microsatellites /Tandem Repeats database

Genome: Salinispora tropica CNB-440

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
65937CAGCGGCT-CAGCGGCT-CAGCGGCTDesign primers
113532CCGGTGGTGGTGGAGCGGCGGCCGGTGGCGGTGGCGCGGCGGCCGGTGGTGGTGGCGCGGCGADesign primers
113598CGACCGGTGGTGGTGGAGCGGCGGCCGGTGGTGGTGGAGCGGCGGCCGGTGGTGGTGGCGCGGDesign primers
682528CCGTTC-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTGDesign primers
790504ACGAGGCCCGGTCAGACT-CCGAGGCCCGGTCAGACT-CCGAGGCCCGGTCAGACTDesign primers
862687GGGGCA-GGGGCA-GGGGCA-GGGGCA-GGGGCADesign primers
930208GGTGCCC-GCTGCCC-GCTGCCC-GCTGCCC-GCTGCCC-GCTGCCCDesign primers
1004100CCCACCGACCACGCCGGAGAACTCACCGACCACGCCGGAGAACTCACCGGCCACGCCGGAGAADesign primers
1234526TGCCGTTGGCGTCGCCG-GGCCGTTGGCGTCGCCG-GGCCGTTGGCGTCGCCGDesign primers
1485811GTCGGCCAGCCCCGGGGCCCGACG-GTCGGTCAGCCCCGGGGCCCGACG-GCCGGTCAGCCCCGGGGCCCGACG-GCCGGTCAGCCCCGGGGCCCGACG-GCCGGTCAGCCCCGGGGCCCGACG-GCCGGTCAGCCCCGGGGCCCGACGDesign primers
1487036GAAGAGCGACGAGCAGCCGGCGAAGAGCGACGAGCTGCCGGTGAAGACCGACGAGCAGCCGACGAAGAGCGACGAGCAGCCGGCDesign primers
1492825GACCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCG-GATCGGATGGGTCCGCCGDesign primers
1589236GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
1620302GT-CT-GC-GG-CC-GC-GC-CC-AC-GT-CT-GC-GC-CC-GC-GC-CC-AC-GT-CT-GC-GC-CC-GC-GC-CC-ACDesign primers
1620357CCCGCGCCCGCGTCCACGTCTGCG-CCCGCGCCCGCGTCCACGTCTGCG-CCCGCGCCCGCGTCCACGTCTGCGDesign primers
1620452GTCTGCGGCCGCGTCCAC-GTCTGCGGCCGCGTCCAC-GTCTGCGCCCGCGTCCACDesign primers
1620584GT-CT-GC-GG-CC-GC-GC-CC-AC-GT-CT-GC-GC-CC-GC-GC-CC-AC-GT-CT-GC-GC-CC-GC-GC-CC-ACDesign primers
1620639CCCGCGCCCGCGTCCACGTCTGCG-CCCGCGCCCGCGTCCACGTCTGCG-CCCGCGCCCGCGTCCACGTCTGCGDesign primers
1620734GTCTGCGGCCGCGTCCAC-GTCTGCGCCCGCGTCCAC-GTCTGCGCCCGCGTCCAC-GTCTGCGCCCGCGTCCACDesign primers
1622221CGTCCGCTTCTACATCCG-CGTCCGCTTCTACATCCG-CGTCCGCTTCTACGTCCG-CGTCCGCTTCTACGTCCGDesign primers
1622536CTACGT-CTACGT-CTACGT-CTACGT-CTACGTDesign primers
1622635CGCCCG-CGCCCG-CGCCCG-CGCCCG-CGCCCGDesign primers
1622682GCGTCCGCGCCCGCGTCT-ACGTCCGCGCCCGCGTCT-ACGTCCGCGCCCGCGTCTDesign primers
1622737CGTCCGCGTCTACGCCCGCGTCTACGCCCGCGTCTADesign primers
1622914CTACGT-CTACGT-CTACGT-CTACGTDesign primers
1623139CGTCCGCGCCCGCGTCTACGCCCGCGCCCGCGTCTACGCCCGCGCCCGCGTCTADesign primers
1638703CGATGC-CGATGC-CGATGC-CGATGCDesign primers
1684168ACGGGCCGGCGGTTGTCGGACGGGCCGGCGGGTGTCGGACGGGCCGGCGGGTGTCGGDesign primers
1689810AGTCCTGGGCGGTGTCGGCCGCGTCCCGGGCGGTGTCGGCCGCGTCCCGGGCGGTGTCGGCCGDesign primers
1779379GGTCCGGGTGGTCCTGTGGGTCCGGGTGGTCCGGTGGGTCCGGGTGGTCCGGTGDesign primers
1779454CCGGGTGGTCCTGAGGGTCCGGGTGGTCCTGAGGGGCCGGGTGGTCCTGTGGGTCCGGGTGGTCCTGTGGGTCCGGGTGGTCCTGTGGGTCCGGGTGGTCCTGAGGGGDesign primers
1779696TCCGTGGTCCCAGTCTCCGTGGTCCCAGTGTCCCTGGTCCCAGTCDesign primers
1844833GTCCAAGCACGACGACAAGTCCAAGCACGACGGCAAGTCCAAGCACGACGGCAADesign primers
1877430CACTGCGTCGCCGACCGG-CACTGCGTCGCCGACCGG-CACTGCGTCCCCGACCGGDesign primers
1879198ACCCTCACCTGTGGCGACGACATTGCCGTCACCTGTGGCGACGACATTGCCGTCACCTGTGGCGACGACATTDesign primers
1953209CCCGCCGACG-CCCGCCGACG-CCCGACGTCG-CCCGCCGACG-CCCGCCGACG-CCCGCCGACGDesign primers
2071934CGCCGTCGGGCTCTGCCACGCCGTCGGGCTCCGCCACGCCGTCGGGCTCCGCCADesign primers
2089553CTTCCGGGCCCTCGGCTC-CTCCCGGGCCCTCGGCTC-CTCCCGGGCCCTCGGCTC-CTCCCGGGCCCTCGGCTCDesign primers
2114000CGGGGGC-CGGGGGC-CGGGGGC-CGGGGGCDesign primers
2232412GTCGTA-GCCGTA-GCCGTA-GCCGTA-GCCGTA-GCCGTADesign primers
2273188TGGCGGTGA-TGGCGGTGA-TGGCGGTGADesign primers
2364433CTGATCCA-CTGATCCA-CTGATCCADesign primers
2406147GGGGCTGGCGGTTTCGGT-TGGGCTGGCGGTTTCGGT-TGGGCTGGCGGTTTCGGTDesign primers
2411401CAGCAGGGTGGGTCGGGT-CAGCCGGGTGGGTCGGGT-CAGCCGGGTGGGTCGGGT-CAGCCGGGTGGGTCGGGTDesign primers
2502105CCGGATG-CCGGATG-CCGGATG-CCGGATGDesign primers
2820079GACACC-GACACC-GACACC-GACACCDesign primers
2841235CCGGTGCCACCGGCCGGACCGCCGTCGGGGCCACCGGCCGGACCGCCGTCGGGGCCACCGGCCGGACCGCCGDesign primers
2894497CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-ACDesign primers
2917913GCCCACCGTCACCACTGCTCACCGTCACCACTGCCCACCGTCACCACGDesign primers
2922074CCGGTCG-CCGGTCG-CCGGTCG-CCGGTCGDesign primers
3066946GATCAGTG-GATCAGTG-GATCAGTGDesign primers
3127337CGACCGGGGGTGCCGCGATCGGGGGTGCCGCGATCGGGGGTGCCGDesign primers
3132536CGACCGGGGGTGCCGCGATCGGGGGTGCCGCGATCGGGGGTGCCGDesign primers
3167742CGGTGCCGTCGGTAG-CGGTGCCGTCGGTAG-CTGTGCCGTCGGTAG-CTGTGCCGTCGGTAGDesign primers
3272399CCGACA-CCGACA-CCGACA-CCGACADesign primers
3307796CGACCC-CGACCC-CGACCC-CGACCCDesign primers
3508288GGGAGATGGGCCGCGAAGGCGACTGGGAAAGGGGCCGCGAAGGCGACTGGGGGAAGGGCCGCGAAGGCGACTDesign primers
3566518GCGCGGTGTTCTACCCGTTGGGCGGTGTTCTACCCGTTGAGCGGTGTTCTACCCGTTDesign primers
3668410CCCGGCTCGGCCCGGTAC-GCCGGCTCGGCCCGGTAC-GCCGGCTCGGCCCGGTACDesign primers
3795926CCGGAA-CCGGAA-GCGGAA-CCGGAA-GCGGAA-CCGGAADesign primers
3795975CGGAAC-CGGAAG-CGGAAG-CGGAAG-CGGAAG-CGGAAGDesign primers
3809083GGAGCA-GGAGCA-GGAGCA-GGAGCADesign primers
3809374GGCGAAGCCCGAGCCCGA-GGCGAAGCCCAAGCCCGA-GGCGAAGCCCAAGCCCGA-GGCGAAGCCCGAGCCCGA-GGCGAAGCCCGAGCCCGA-GGCGAAGCCCGAGCCCGADesign primers
3985411CCTGGACCAACCCGGCCGGGACCAACCCGGCCGGGACCAACCCGGDesign primers
3985496GGCGAGGAGGTCCGG-GTCGAGGAGGTCCGG-GTCGAGGAGGTCCGG-GTCGAGGAGGTCCGG-GTCGAGGAGGTCCGG-GTCGAGGAGGTCCGGDesign primers
3990619CGGCCTCCT-CGGCCTCCT-CGGCCTCCTDesign primers
4022679GCGACGCCCAGC-GCCACGCCCAGC-GCCACGCCCAGC-GCCACGCCCAGCDesign primers
4026716GTCACCG-GTCACCG-GTCACCG-GTCACCGDesign primers
4122812GGCACGGCGACGACCGACACGGCGACGACCGGCACGGCGACGACGDesign primers
4136342CCGAGCTG-CCGAGCTG-CCGAGCTGDesign primers
4175326CGCTCGCCACGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCACGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCACGCTCAGCACGCTCGCCCCGCTCAGCACGCTCGCCACGCTCAGCACGCTCGCCGCGCTCAGCADesign primers
4231114CCAAGCCGGCTGCCGCCAAGCCGGCTACCGCGAAGCCGGCTGCCGDesign primers
4302542CTGACCGG-CTGACCGG-CTGACCGG-CTGACCGGDesign primers
4371486GCCCAGGCCGAAGCCGCC-GCCCAAGCCGAAGCCGCC-GCCCAAGCCGAAGCCGCC-GCCCAAGCCGAAGCCGCCDesign primers
4464217CGGCTT-CGGCTT-CGGCTT-CGGCTT-CGGCTTDesign primers
4544717GGGCAA-GGGCAA-GGGCAA-GGGCAADesign primers
4730964CGTGGT-CGTGGT-CGTGGT-CGTGGTDesign primers
4819871GCCCGA-GCCCGA-GCCCGA-GCCCGADesign primers
4877801CCAGGAGACGGAGCCCGG-CCAGGAGACGGGGCCCGG-CCAGGAGACGGGGCCCGG-CCAGGAGACGGGGCCCGG-CCAGGAGACGGGGCCCGGDesign primers
4942166GGCTTT-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
4967728GCGTCGA-ACGTCGA-ACGTCGA-ACGTCGA-ACGTCGA-ACGTCGA-ACGTCGA-ACGTCGADesign primers
5014147AAAGCGGCCGCGGGCCGGGGAAAACGGCCACGGGCCGGGGAAAACGGCCACGGGCCGGGGDesign primers
5045639CCGGGGCGGTCTGACCCGGGGCGGCCTGACCCGAGGCGGTCTGACCCGAGGCGGTCTGACCCGAGGCGGTCTGACCCGGGGCGGCCTGACDesign primers
5074057CGCGACGCCGACCGACAAGGTCCCCGCAACGCCGACCGACAAGGTCCCCGCAACGCCGGCCGACAAGGTCCCDesign primers
5100430GGGCCGGGCGGGCCAGGTGGACCGGGCGGGCCAGGTGGACCGGGCGGGCCAGGTDesign primers
5129906TCAGTTCCCACCACCCGGTCAGTTCCCACCGCCCGGCCAGTTCCCACCACCCGGDesign primers
5145037AGAGCACCGACGACAAGGGCACCGACGACAAGAGCACCGACGACADesign primers
5148620GTTGTTGTTGCCACCGCC-GTTGTTGTTGCCACCGCC-GTTGTTGTCGCCACCGCC-GTTGTTGTCGCCACCGCCDesign primers

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