Microsatellites /Tandem Repeats database

Genome: Salinispora tropica CNB-440

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
65937CAGCGGCT-CAGCGGCT-CAGCGGCTDesign primers
682534CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTG-CCGTTGDesign primers
790505CGAGGCCCGGTCAGACTC-CGAGGCCCGGTCAGACTC-CGAGGCCCGGTCAGACTCDesign primers
862687GGGGCA-GGGGCA-GGGGCA-GGGGCA-GGGGCADesign primers
930210TGCCCGC-TGCCCGC-TGCCCGC-TGCCCGC-TGCCCGC-TGCCCGCDesign primers
1234527GCCGTTGGCGTCGCCGG-GCCGTTGGCGTCGCCGG-GCCGTTGGCGTCGCCGGDesign primers
1485837CGGTCAGCCCCGGGGCCCGACGGC-CGGTCAGCCCCGGGGCCCGACGGC-CGGTCAGCCCCGGGGCCCGACGGC-CGGTCAGCCCCGGGGCCCGACGGC-CGGTCAGCCCCGGGGCCCGACGGCDesign primers
1492828CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGAT-CGGATGGGTCCGCCGGATDesign primers
1589236GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
1620355CGCCCGCGCCCGCGTCCACGTCTG-CGCCCGCGCCCGCGTCCACGTCTG-CGCCCGCGCCCGCGTCCACGTCTGDesign primers
1620637CGCCCGCGCCCGCGTCCACGTCTG-CGCCCGCGCCCGCGTCCACGTCTG-CGCCCGCGCCCGCGTCCACGTCTGDesign primers
1620742CCGCGTCCACGTCTGCGC-CCGCGTCCACGTCTGCGC-CCGCGTCCACGTCTGCGC-CCGCGTCCACGTCTGCGCDesign primers
1622536CTACGT-CTACGT-CTACGT-CTACGT-CTACGTDesign primers
1622635CGCCCG-CGCCCG-CGCCCG-CGCCCG-CGCCCGDesign primers
1622683CGTCCGCGCCCGCGTCTA-CGTCCGCGCCCGCGTCTA-CGTCCGCGCCCGCGTCTADesign primers
1622740CCGCGTCTACGC-CCGCGTCTACGC-CCGCGTCTACGCDesign primers
1622914CTACGT-CTACGT-CTACGT-CTACGTDesign primers
1623142CCGCGCCCGCGTCTACGC-CCGCGCCCGCGTCTACGC-CCGCGCCCGCGTCTACGCDesign primers
1638703CGATGC-CGATGC-CGATGC-CGATGCDesign primers
1779490CCGGGTGGTCCTGTGGGT-CCGGGTGGTCCTGTGGGT-CCGGGTGGTCCTGTGGGTDesign primers
1879202TCACCTGTGGCGACGACATTGCCG-TCACCTGTGGCGACGACATTGCCG-TCACCTGTGGCGACGACATTGCCGDesign primers
1953237CGCCCGCCGA-CGCCCGCCGA-CGCCCGCCGADesign primers
2089556CCGGGCCCTCGGCTCCTC-CCGGGCCCTCGGCTCCTC-CCGGGCCCTCGGCTCCTC-CCGGGCCCTCGGCTCCTCDesign primers
2114000CGGGGGC-CGGGGGC-CGGGGGC-CGGGGGCDesign primers
2232414CGTAGC-CGTAGC-CGTAGC-CGTAGC-CGTAGC-CGTAGCDesign primers
2273188TGGCGGTGA-TGGCGGTGA-TGGCGGTGADesign primers
2364433CTGATCCA-CTGATCCA-CTGATCCADesign primers
2411406GGGTGGGTCGGGTCAGCC-GGGTGGGTCGGGTCAGCC-GGGTGGGTCGGGTCAGCCDesign primers
2502105CCGGATG-CCGGATG-CCGGATG-CCGGATGDesign primers
2820079GACACC-GACACC-GACACC-GACACCDesign primers
2841240GCCACCGGCCGGACCGCCGTCGGG-GCCACCGGCCGGACCGCCGTCGGG-GCCACCGGCCGGACCGCCGTCGGGDesign primers
2894497CC-CC-AC-CC-CC-AC-CC-CC-AC-CC-CC-ACDesign primers
2922074CCGGTCG-CCGGTCG-CCGGTCG-CCGGTCGDesign primers
3066946GATCAGTG-GATCAGTG-GATCAGTGDesign primers
3127341CGGGGGTGCCGCGAT-CGGGGGTGCCGCGAT-CGGGGGTGCCGCGATDesign primers
3132540CGGGGGTGCCGCGAT-CGGGGGTGCCGCGAT-CGGGGGTGCCGCGATDesign primers
3167759GTGCCGTCGGTAGCT-GTGCCGTCGGTAGCT-GTGCCGTCGGTAGCTDesign primers
3272399CCGACA-CCGACA-CCGACA-CCGACADesign primers
3307796CGACCC-CGACCC-CGACCC-CGACCCDesign primers
3668411CCGGCTCGGCCCGGTACG-CCGGCTCGGCCCGGTACG-CCGGCTCGGCCCGGTACGDesign primers
3795981CGGAAG-CGGAAG-CGGAAG-CGGAAG-CGGAAGDesign primers
3809083GGAGCA-GGAGCA-GGAGCA-GGAGCADesign primers
3809421AGCCCGAGGCGAAGCCCG-AGCCCGAGGCGAAGCCCG-AGCCCGAGGCGAAGCCCG-AGCCCGAGGCGAAGCCCGDesign primers
3985498CGAGGAGGTCCGGGT-CGAGGAGGTCCGGGT-CGAGGAGGTCCGGGT-CGAGGAGGTCCGGGT-CGAGGAGGTCCGGGT-CGAGGAGGTCCGGGTDesign primers
3990619CGGCCTCCT-CGGCCTCCT-CGGCCTCCTDesign primers
4022682ACGCCCAGCGCC-ACGCCCAGCGCC-ACGCCCAGCGCC-ACGCCCAGCGCCDesign primers
4026716GTCACCG-GTCACCG-GTCACCG-GTCACCGDesign primers
4136342CCGAGCTG-CCGAGCTG-CCGAGCTGDesign primers
4175335CGCTCAGCACGCTCGCCC-CGCTCAGCACGCTCGCCC-CGCTCAGCACGCTCGCCCDesign primers
4175407CGCTCAGCACGCTCGCCC-CGCTCAGCACGCTCGCCC-CGCTCAGCACGCTCGCCC-CGCTCAGCACGCTCGCCCDesign primers
4302542CTGACCGG-CTGACCGG-CTGACCGG-CTGACCGGDesign primers
4371492GCCGAAGCCGCCGCCCAA-GCCGAAGCCGCCGCCCAA-GCCGAAGCCGCCGCCCAADesign primers
4464217CGGCTT-CGGCTT-CGGCTT-CGGCTT-CGGCTTDesign primers
4544717GGGCAA-GGGCAA-GGGCAA-GGGCAADesign primers
4730964CGTGGT-CGTGGT-CGTGGT-CGTGGTDesign primers
4819871GCCCGA-GCCCGA-GCCCGA-GCCCGADesign primers
4877813GCCCGGCCAGGAGACGGG-GCCCGGCCAGGAGACGGG-GCCCGGCCAGGAGACGGG-GCCCGGCCAGGAGACGGGDesign primers
4942172GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
4967729CGTCGAA-CGTCGAA-CGTCGAA-CGTCGAA-CGTCGAA-CGTCGAA-CGTCGAA-CGTCGAADesign primers
5045664CTGACCCGAGGCGGT-CTGACCCGAGGCGGT-CTGACCCGAGGCGGTDesign primers

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