Microsatellites /Tandem Repeats database

Genome: Shewanella amazonensis SB2B

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
55784AAAAAACAAAAAAACTTAAAAACADesign primers
128991ATCTCAATGACATCTCCCTGACGTCTTAATGACDesign primers
147907GTGGTTCAGGCGGTGGTTCAGGCGGTGGCTCTGGCAGTGGTACAGGCGGTGGTTCAGGCGGTGGCTCGGGCGGTGGTTCGGGCAGTGGCTCGGGCGGAGGTTCAGGCAGTGGCTCCGGCGDesign primers
182347CCCTGGCGCTGGCCGTGGCCTTGGDesign primers
331796GGCATAA-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTATDesign primers
370565TGGTTTTTCGTCGACCGGTTCTTTGTCGACCGGTTCTTCGTCGGCDesign primers
560002ACAACAATAACAACAATAACAACGDesign primers
581119CCGAGGCGGAGGCCGAAGCCAAGGDesign primers
665997CTCAGGGGCCTTTTGGTCAGGGGCCGTTTGGCCAGGGACCTTTTGDesign primers
681509AAATCA-AAGTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCC-AACTCCDesign primers
815326TGTGCCTGTGTC-ACTGCCTGTGTC-ACTGCCTGTGTCDesign primers
880842TCGCCCCTGCCGGCGCCCCTGCCCGCGCCCCTGCTGDesign primers
922610GCAGGCATGCAGGGATGCTGGCATDesign primers
969081CTTTGGTTAATGGGGTTTTGGTTAAGAGGGCTTTGGCTAACAGGGDesign primers
1008079CGTCTT-CGTCTT-CCTCTT-CGTCTTDesign primers
1161443GCTCAAGCCGAAGCCCAGGCAAAAGCCGAAGCCGAAGCCAAGGCTAAAGCTGAGGCCGAAGCCAAGGCAAAADesign primers
1345395CTGTATTTCAGGAC-TGGTATTTCAGGAC-TGGTATTTCAGGAC-TGGTATTTCAGGAC-TGGTATTTCAGGACDesign primers
1345801GATAGCGGCACTTGGCGCCTGAGTTTACAGCGGCGCTCGGCGCCTGAATTTATAGCGGCGCTCGGCGCCTGAGGTDesign primers
1377690ATCAACTT-CTCAACTT-CTCAACTTDesign primers
1377793GCTGAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGC-TAAAAGCDesign primers
1398693CGGTTACGGTAATGGTTACGGTGADesign primers
1408631TTCCACTAAAACGTC-GGCCACTAAAACGTC-GGCCACTCAAACGTCDesign primers
1471136TCAGCACAGCGCGATTTCAACACAGTGCCATTTCAACACAGCGCCATTDesign primers
1529544GGCGGCGGTGGCGGCAGCGGCGGCDesign primers
1634498GCTGAAACACAGAGGCTGAAACGCTGAGGCTGAAGCACAGAGGCTGAAACACAGAGDesign primers
1657832AGCTCTGAAGTGTAATAGCGCTGAACTGCAATAGCTCTGAACTGTAAAAGCGCTGAACTGTAAADesign primers
1676018TAGCAAATAAAGTCGCAAATAAAGCCGCAAATAAAGDesign primers
1715989TCTATTCTAAAGACGCCACTATTCTCAATACGCCACTATTCTCAATACGCCDesign primers
1742734GTGTGTATAGATGTATGTATAGAAGTAGGTATAGATDesign primers
1743750TTTGGTTGAGGACTCTTTTTGGGTCGAGGACTCTTTTTGAGTTGAAGACTCTTTDesign primers
1792772TGATGCGGAATT-TGACGCAGATTT-TGACGCAGATTT-TGACGCAGATTT-TGAGGCAGATTT-TGAGGCAGATTTDesign primers
1792845GAGGCAGATAGT-GAGGCAGATAGT-GAGGCAGATAGTDesign primers
1822206TGACTGG-CGACTGG-CGACTGG-CGACTGG-CGACTGGDesign primers
1902667TGGCTTTGCA-TCGTTTTGCA-TCGTTTTGCA-TCGTTTTGCA-TCGCTTTGCADesign primers
1943439CATCGCCAACGCCATCTCCATCGADesign primers
2146794CACCAT-CACCAT-CATCAT-CACCACDesign primers
2202333TTTGT-TTAGG-TTAGG-TTAGG-TTAGT-TGAGGDesign primers
2215171TATTATTTCTATTCTTTCTATTCTTTCDesign primers
2419396AGCCCCAGTAGTTGAAGACGCTGTAGTTGAAGCCCCAGTAGTTGADesign primers
2629393GCAACAACACGAAAGCCAGCAAAACGAAAGCCAGCAAAACGAAAGDesign primers
2653907GTATGAGACTGGGCATTCGTATGACATTGGGTATTCGTATGACACTGGGCATCCDesign primers
2661042TATCCGGCTATCAGGCTATCCGGCDesign primers
2681462AAAAATTAAAATAACAATAAATATDesign primers
2689516TATTCCCT-TAATCCCT-TAATCCCT-TAATCCCTDesign primers
2693871CTGATTGCTATGGCTTAGTGCTATGGCTGATTGCTAGGGTTGATTGCTAGGGDesign primers
2695267AGCACCAGCAGCAACACCAACACCDesign primers
2698929CCTAGAT-TCTAGAT-TCTAGAT-TCTAGATDesign primers
2705049TTCACAA-TTAACCA-TTCACCA-TTCACCA-TTCACCA-TTCACCADesign primers
2726877AAGAAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGGDesign primers
2727372GCTCTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGGTTC-TAGATTC-TAGGTTC-TAGGTTCDesign primers
2730130GGCTTCT-AGAATCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCTDesign primers
2815604TTCAGAGCTCAATTTCAGAGCTGGATTTCAGAGCTGGATDesign primers
2862463ACGCGTGATGCAAGAAAGCTTGATGCAAGAAGGCTTGATGTAAGADesign primers
2946600GCCTTGGCCCTGGTCTTGGCCTTCDesign primers
2957336ACTGGGCTTAGTGCTGGGCGTAGTGCTGGGCTTAGTGCTGGGCTTAGTGCTGGGCTTGGTDesign primers
2957438CTTTGCCTTGGTTACTGGCTTGGTCTGGGTTACTGGCTTGGTCTTGGTTCCTGGDesign primers
3028383CAGTGCTTGAGCGTATTCCTGAAAAAGCTTGAGCGCATTCCTGAAAAAGCTTGAGCGCATTCCTGADesign primers
3152498ACGTCTAAACGTATAAAAGTCTAADesign primers
3237835AGGCTCAGGCTTAAGCTCGGGCTCAGGCTGDesign primers
3308407ATCACGTATCCGAACTCACGCATCCGAACTCACGTATCCGAGDesign primers
3324516ATGCCGGTCTTC-ATGCCGCGCTTC-ATGCTGCTCTTC-ATGCTGCTCTTC-ATGCTGCTCTTCDesign primers
3347300AAGGTGCACTTTAACTAAGGTGCAATTTAACTAAGGTGCTGTTTAGCTDesign primers
3420331CAACGCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCT-ATTCCCTDesign primers
3420416TTCCCTATTC-CCCCCTATTC-CCCCCTATTCDesign primers
3437988AAGGGCAACAAGAGAACGTGCAACAAGAGAACGTGCAGCAAGAGADesign primers
3452349CGGTGTTTTGGTGTTTTGGTTTTTTGGTTTTTTGGTTTTTTGGTTTTTDesign primers
3521234AACCAG-AACCAG-AATCAG-AACCAG-AATCAG-AATCAGDesign primers
3523035GGTGTCCTCACTCTT-TGCATCCTCACTCTT-TGCATCCTCACTCTT-TGCATCCTCACTCTTDesign primers
3708086CTCGTCTACCGTCTACCGTCTACCGTCTACCGTCTACCGTTTACCGTCTACCGTTTACCGTTTDesign primers
3708150CCGTTTA-CCGTTTA-CCGTTTA-CCGTTTADesign primers
3726458GTC-TTC-GTC-GTC-ATC-TTC-GTC-GTCDesign primers
3767843ATTAGATTTTTTTCAATGAAATTTTTATCAATTAGATAAATTTCADesign primers
3927869ACGGTCT-ACGGTTT-ACGGTTT-ACGGTCTDesign primers
3935429TTCTGTTTAATGCTGCTTAATGCTGCTTAADesign primers
3935643GTACCGT-TTACCGT-TTACCGT-TTACCGTDesign primers
3941673GACAGCCGTGAGCGCATGGACAATCGTGAACGCATGGAGAGCCGTGAGCGCAGCDesign primers
3952794TCTATG-ACTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGCDesign primers
3952943CACGGGCTCTGCGGCAACCACAGGCTCAGTGGCAACCTCAGGCTCTGCTGCAACDesign primers
4026831TCGTCT-GGGTCT-GGGTCT-GGGTCT-GGGTCT-GGGTCT-GGGTCT-GGGTCTDesign primers
4141545CTGCCACTCTGTCACTCTGCCACADesign primers
4214068CTGCTGGTTGCCCTTCCGGTTGCCCTGCTGGCCGCCDesign primers

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