Microsatellites /Tandem Repeats database

Genome: Shewanella amazonensis SB2B

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
331803TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTAT-TCCGTATDesign primers
681518TCCAAC-TCCAAC-TCCAAC-TCCAAC-TCCAAC-TCCAAC-TCCAACDesign primers
815328TGCCTGTGTCAC-TGCCTGTGTCAC-TGCCTGTGTCACDesign primers
1345397GTATTTCAGGACTG-GTATTTCAGGACTG-GTATTTCAGGACTG-GTATTTCAGGACTGDesign primers
1377691TCAACTTC-TCAACTTC-TCAACTTCDesign primers
1377797AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAA-AGCTAAADesign primers
1792782TTTGACGCAGAT-TTTGACGCAGAT-TTTGACGCAGATDesign primers
1792844TGAGGCAGATAG-TGAGGCAGATAG-TGAGGCAGATAGDesign primers
1822207GACTGGC-GACTGGC-GACTGGC-GACTGGC-GACTGGCDesign primers
1902671TTTGCATCGT-TTTGCATCGT-TTTGCATCGTDesign primers
2689519TCCCTTAA-TCCCTTAA-TCCCTTAA-TCCCTTAADesign primers
2698930CTAGATT-CTAGATT-CTAGATT-CTAGATTDesign primers
2705059ACCATTC-ACCATTC-ACCATTC-ACCATTC-ACCATTC-ACCATTCDesign primers
2726881AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCT-AGGTTCTDesign primers
2727376TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGGDesign primers
2727481TTCTAGG-TTCTAGG-TTCTAGG-TTCTAGGDesign primers
2730141TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGT-TCTAGGTDesign primers
2957356TAGTGCTGGGCT-TAGTGCTGGGCT-TAGTGCTGGGCTDesign primers
3324536CTTCATGCTGCT-CTTCATGCTGCT-CTTCATGCTGCTDesign primers
3420336CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCC-CTATTCCDesign primers
3452362TTTTGGTT-TTTTGGTT-TTTTGGTT-TTTTGGTT-TTTTGGTTDesign primers
3523039TCCTCACTCTTTGCA-TCCTCACTCTTTGCA-TCCTCACTCTTTGCA-TCCTCACTCTTTGCADesign primers
3708088CGTCTAC-CGTCTAC-CGTCTAC-CGTCTAC-CGTCTACDesign primers
3708134TACCGTT-TACCGTT-TACCGTT-TACCGTT-TACCGTT-TACCGTTDesign primers
3935644TACCGTT-TACCGTT-TACCGTT-TACCGTTDesign primers
3952801CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCTDesign primers
4026833GTCTGG-GTCTGG-GTCTGG-GTCTGG-GTCTGG-GTCTGG-GTCTGGDesign primers

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