Microsatellites /Tandem Repeats database

Genome: Nocardioides sp. JS614

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1662CCCACCGCGGCCCCACGGCGGCCCCACGGCGGCDesign primers
4753AGCACGCAAGGGGGGCTT-CGCACGCAAGGGGGGCTT-CGCACGCAAGGGGGGCTTDesign primers
43091GGTCTCGGT-GGTCTCGGT-GGTCTCGGTDesign primers
171694CTCGGACCTGCCCAGCATCGACCCCTCGGACCTGCCGAGCATCGATCCCTCGGACCTGGCCAGCATGGACCCDesign primers
178476GTCGCTGCCCTGGTCGCTGGCCTGGTCGCTGGCCTGDesign primers
193675GGTCACGGCCCGGGTCACGGTCCGGGTCACGGCCCADesign primers
231781CGGTCACGTCGC-TGGTCACGTCGC-TGGTCACGTCGCDesign primers
242891GGCCGCGGT-GGCCGCGGT-GGCCGCGGTDesign primers
267130CCGGTGACC-CCGGTGACC-CCGGTGACCDesign primers
329453CCGCCCCGG-CCGCCCCGG-CCGCCCCGGDesign primers
334665CCAGCACGAGCACGAGCACGAGCACCAGCACGAGCADesign primers
334986CGAAGGACA-CGAAGGACA-CGAAGGACADesign primers
348898GCCACC-GCCACC-GCCACC-GCCACCDesign primers
396126GGGCTGGTCCGGGGCTGGCCCGGCGCTGGTCCGDesign primers
453129GCCGCCCAGGACTGAGCTGCCCAGGACTGAGCTGCCCAGGACTGADesign primers
481759GTCGAGGAC-GGCGAGGAC-GGCGAGGAC-GGCGAGGAC-GGCGAGGAC-GGCGAGGACDesign primers
536440CCGGCCTTCGAGCGGACCGTGGCCGGCCCTTCGAGCGGACCGTGGCCGGCCCTTCGAGCGGACCGTGGCDesign primers
615614TGGGCCAGCAGGTCGGCCAGCAGGTCGGCCAGCAGGDesign primers
663435TCTCTCG-GCTCTCG-GCTCTCG-GCTCTCG-GCTCTCG-GCTCTCGDesign primers
712920CGTAGGGCTGCT-GGTAGGGCTGCT-GGTAGGGCTGCTDesign primers
749551CTCGCCCAGCACCCGCCCAGCACTCGCCCGGCADesign primers
799904GCCGGAGCGGTGGTC-GCCGGAGCGGTGGTC-GCCGGAGCGGTGGCC-GCCGGAGCGGTGGCCDesign primers
1015204TCGTCGGGGTGT-CCGTCGGGGTGT-CCGTCGGGGTGTDesign primers
1070270GCGGGAGTGCGGGCGGAAGTGCGGGCGGAAGTGCGGDesign primers
1201328GCCGATCCCGCCGCCGACCCCGCCGCCGACCCCGCCDesign primers
1294560CGGCAGTCACGC-CGGCAGTCACGC-CGGCGGTCACGCDesign primers
1321284CGGCACCCA-CGGCACCCA-CGGCACCCADesign primers
1327741CGGCGCACCCGGCGACGCACCCGGCGACGCACCCGGDesign primers
1404609CAGCGCCGGGTCAGCGCGGGGTCAGCGCGGGGTDesign primers
1410175CCGAGCTCCTCG-CCGAGCTCCTCG-CCGAGTTCCTCGDesign primers
1453156GGTCTCGGGCGCCTC-GGTCTCGGGTGCCTC-GGTCTCGGGTGCCTC-GGTCTCGGGCGCCTCDesign primers
1512485CCGAGATCGAGGCGGAGATCGAGGCCGAGATCGAGGDesign primers
1524051GCCTGGTCCGGACTGGTCCGGACTGGTCCGDesign primers
1564510CCCGTGTCCGATCCCGTGCCCGATCCCGTGTCGGATDesign primers
1711960CCTCGGCGC-CCTCGGCGC-CCTCGGCGC-CCTCGGCGCDesign primers
1797502GGGACCGGTCAGC-GGGACCGGTCAGC-GGGACCGGTCGGCDesign primers
2011442CCACTGGCCGAA-CCACTGGCCGAA-CCCCTGGCCGAA-CCCCTGGCCGAADesign primers
2145768GGTGTCTGG-GGTGTCTGG-GGTGTCTGGDesign primers
2292678CGTCCGA-AGTCCGA-AGTCCGA-AGTCCGA-AGTCCGA-AGTCCGADesign primers
2452974GCTGCTGGGCCTGTTGCTGGGCCTGTTGCTGGGCCTDesign primers
2453257CTCGGG-CTCGGG-CTCGGG-CTCGGGDesign primers
2663949CGACACCGGGCC-TGACACCGGGCC-TGACACCGGGCCDesign primers
2811917CGCCGTCCGTCACGCCGTCCCTCACGCCGTCCGTCADesign primers
2897173CTACTTCCGGG-CTACTTCCGGG-CTACTTCCCGGDesign primers
2929547TGGGCCAGCAGGTCGGCCAGCAGGTCGGCCAGCAGGDesign primers
2937107CTTCTGCGCGGACTTCTGCACGGACTTCTGGGCGGADesign primers
3104867ACCGCG-ACCGCG-ACCGCG-ACCGCGDesign primers
3105607TCGGGCACG-GCGGGCACG-GCGGGCACG-GCGGGCACG-GCGGGCACG-GCGGGCACGDesign primers
3107284CCCTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATG-CCGTCCATGDesign primers
3253084GCCGCCTTCTTGGCGGGTGCCGCCTTCTTGGCGGGCGTCGCCTTCTTGGCGGGTGCCGCTTTCTTGGCGGGTGCCGCCTTCTTGGCGGGTGCCGCCTTCTTGGCGGGTGCCGCCTTCTTCGCGGGTGCCGCCTTCTTCGCGGGTGCCGCCTTCTTCGCGGGTDesign primers
3253318GCCGCCTTCTTCGCGGGCGCGGCCTTCTTCGCGGGCGCCGCCTTCTTGGCGGGCDesign primers
3272065TGGGTGCTGG-CGGGTGCTGG-CGGGTGCTGGDesign primers
3279025TGCGCCGTTCGCTGGGCCGTTCGCTGGGCCGTTCGCDesign primers
3483076TCGGCAACC-TCGGCAACC-TCGGCAACCDesign primers
3502366GCCGGAGCCTTCTTG-GCCGGAGCCTTCTTG-GCCGGTGCCTTCTTGDesign primers
3532813TCAGCCGGG-TCAGCCGGG-TCAGCCGGGDesign primers
3581193CGCGTT-CGCGTT-CGCGTT-CGCGTTDesign primers
3617879CTGAACAGCGTTCAG-GTGAACAGCGTTCAG-GTGAACAGCGTTCAG-GTGAACAGCGTTCAG-GTGAACAGCGTTCAGDesign primers
3659106CGGCCGGCTCCGCGACGACCGGCTCCGCGACGACCGGCTCCGCGADesign primers
3659380CGCCGCCTCGGTCGCCGCGTCGGTCGCTGCCTCGGTDesign primers
3661387CTTCTTGGCGGCGGTCTTCTTGGCAGCGGTCTTCTTGGCGGCGGTDesign primers
3661511GCGGCCTTCTTGGCCGGGGCCTTCTTGGCCGCGGCCTTCTTGGCGDesign primers
3675176CAGGT-CAGGT-CAGGT-CAGGT-CAGGTDesign primers
3684347CGTGCC-CGTGCC-CGTGCC-CGTGCCDesign primers
3826201ACGCCCAGACGT-ACGCCCAGACGT-ACGCCCAGACCTDesign primers
3886082ACTACCTGCCGTAGGA-GCTACCTGCCGTAGGA-GCTACCTGCCGTAGGADesign primers
3957399GGGAACCGGCG-AGGAACCGGCG-AGGAACCGGCGDesign primers
3994159CGACGAGGG-CGACGAGGG-CGACGAGGG-CGACGAGGG-CGACGAGGGDesign primers
4050064GTCGTCCCCGTGGTCGTCGCCGTGGTCGTCCCCGTGDesign primers
4050108CGCGGTCGTCCCCGTGGTCGTCCCCGCGGTCGTCCCDesign primers
4222794CTCGCGGCCGGCCTCCTTGCGGCCGGCCTCCTTGCGGCCGGCCTCDesign primers
4272929GACTCGGCGCCGGACTCCGCGCCGGACTCGGGGCCGGACTCGGCGCCGDesign primers
4484571GTCCGTCGTCGGGTCCGTCGTCGAGACCGTCGTCGGGTCCGTCGCCGGDesign primers
4484643CGTCGGGGCCGCCGTCGAGGCCGCCGTCGGGGCGGCDesign primers
4562081ACCGGCCCAGAACCGGACCAGAACCGGACCAGADesign primers
4574510CGCCCGCGC-CGCCCGCGC-CGCCCGCGC-CGCCCGCGCDesign primers
4579976CGACCGCCACGTCGACCACCACGTCGACCACCACGTDesign primers
4597934GGTCGCCGTCGG-GGTCGCCGTCGG-GGTCGCCGTCCGDesign primers
4654728CCCGCCACGACC-CCCGCCACGAGC-CCCGCCACGAGC-CCCGCCACGAACDesign primers
4669978CACGGCCGCCCGCCGCGCGGCCGCCCGCCGCGCGGCCGCCCGCCGDesign primers
4679070GACACCGGCTCCCGCCAGGACACCGGCACCCGCCAGGACACCGGCTCCCGCCAGDesign primers
4687163GACCACGCCGTGACCACGCCATGACCACGCCATDesign primers
4726168GGTCGA-GGTCGA-GGTCGA-GGTCGADesign primers
4763839CGGAGC-CGGAGC-CGGAGC-CGGAGCDesign primers
4777178CTGGCGGAGGACCTGGCGGAGGATCCGGCGGAGGACDesign primers
4825198AGGCCCAGAGTTTGGCCCAGAGTTAGGCCCAGAGTTDesign primers
4866005CGGGCGACATCGGAC-CGGGCGACATCGGAC-CGGGCGACATCGGGCDesign primers
4949767ACGTCGAACGGGTGGCTCACGTCGAAGGGGTGGCTCACGTCGAACGGGTGGCTCDesign primers
4957706GCTGGTCGGGGT-GCTGGTCGGGGT-GCTGGTCGGCGTDesign primers
4973049ACCCGATGAGC-GCCCGATGAGC-GCCCGATGAGCDesign primers

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