Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Acidothermus cellulolyticus 11B

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
17415	GCC-GAC-GAC-GAC-GGC-GAC-GCC-GAC	Design primers
80645	AGC-GGC-GGC-GGC-CGC-GGC-AGC-GGC	Design primers
121595	CGCGACCCGACCCGGCCCGACGGGACCCGG	Design primers
147439	GGGCGTGGGGGTGGCCGTGGGCGT	Design primers
189318	TGTCGCCGTCTCCGTCGCCGTCGCCGAGTCCGTCGCCGTCGCCGAGTCCGTCGC	Design primers
189902	AGCCCGACACCGTCCCCGAGCCCGACACCGTCCCCGTCCCCGAGCCCGAGCCCGTCGCCGTCTCCGAGTCCG	Design primers
191952	GTCGCCGTCTCCGTCGCCGTCGCC	Design primers
191977	AGTCCGTCGCCG-AGTCCGTCGCCG-AGTCCGTCGCCG	Design primers
192529	AGCCCGACACCGTCCCCGAGCCCGACACCGTCCCCGTCCCCGAGCCCGAGCCCGTCGCCGTCTCCGAGTCCG	Design primers
308216	CGCCGGTCCCCGCCGTTCTCCGCCGGTCCC	Design primers
315034	GACTGAAGACGCGGCGAGCTGAAGAGGCGGCGAGCTGAAGACGCGGCG	Design primers
386091	TGCCGGGTTTACACGTTCCCGGTTTACGCGTTCCCGGTTTACCCG	Design primers
447017	GCCTGAGCCCGACCCTGAGCCCGA	Design primers
454899	GCTCGCCGCGCTCGGCGCGCTCGGCGC	Design primers
456289	CGCCCGGCCGAGCCCCAGCCCCGACACCCGCCCGGACCCCAGCCCCGACGCCCGCCCGCGCCCCAGCCCCGA	Design primers
471130	GCCCTCGTCCTCGCCGTCGCCCTG	Design primers
476621	GCGGGAATCTCCCAGGAATCTCCCGGCAATCTC	Design primers
486244	CCGCTGAGCCGGAGGGGCGGCTGAGCCGGCCGGGCGGGTGAGCCGGAGGGA	Design primers
562026	GGCGTCCGCGTGCTGAGACGACGTCCGTGCGCTGAGACGACGTCCGTGCGCTGAGAC	Design primers
627203	GTCGACGTCGCCGCCGACGTCGGC	Design primers
654484	ACGCCGACGCCTACTCCGACGCCG	Design primers
656433	GCCGAGTCCGAGCCCGAGTCCGAGCCCGAG	Design primers
656511	GCCGAGCCCGAGTCCGAGCCCGAG	Design primers
656577	GCCGAGCCCGAGTCCGAGCCCGAG	Design primers
656643	GCCGAGCCCGAGTCCGAGCCCGAG	Design primers
657182	CCCCGA-GCCCGA-GCCCGA-GCCCGA	Design primers
658228	AGCCCGACACCGAGCCCGAGCCCGACGCCGACACCGAGCCCGACGCCG	Design primers
660065	TCCTCGTCGCCG-TCTCCGTCGCCG-TCTCCGTCGGCG-TCTCCGTCGGCG-TCTCCGTCGGCG-TCTTCGTCGCCG	Design primers
660653	ACCCCGTCCCCGAGCCCGAGCCCGACCCCA	Design primers
667196	CCGAGC-CTGAGC-CCGAGC-CCGAGC-CCGAGC	Design primers
667269	CGTCGCCGTCTCCGTCGCCGTCACCATCGC	Design primers
668205	CGAGTCCCAGCC-CCAGCCCCAGCC-CGACCCCCAGCC-CGACCCCCAGCC-CGACCCCCAGCC-CCAGCCCCAGCC	Design primers
668303	AGCCCG-AGCCCG-AGCCCG-AGCCCG-AGCCTC-AGCCCG-AGCCCG-AGCACG	Design primers
722642	CGTCGCCCCAGCCGCGACCGTGCGCGGGTCACCCAGCCGCGACCGTGCGCGGGGCACCCAGCCGCGACCGTGCGC	Design primers
820679	GAGCAGCCCATGCACATAGCAATGCAGCAGCCCATGCACATAGCAATTCAGCGACCCATGCACGTAGCAATGCAGCAGCCCATGCAACAAGCAATG	Design primers
825205	CACCGTCACGGTCACCGTCACCGC	Design primers
859351	AGTCAGCCGCCGCGGCCGGGACCATGGTTGCCGCCGCGGCCGGGACCATGGTTGCCGCCGCGGCCGGGACCA	Design primers
891282	TCCACGCGGGACGGCGTCCGGCCCGCGGGGAACGGCGTCCGGCCCGCGGGGAACGGCGTCCGG	Design primers
893136	TGGCCCTGCCTTGGCTATTGCCCTGCCGTGGCTATGGCATTGCCTCGGCTA	Design primers
930224	GCAGTAGCAGCAGCAATAGCAGCA	Design primers
954684	TTGAGGACATCG-CTGAGGACATCG-CTGAGGACAGCG	Design primers
1004733	GCTACCGGATCCTGACAGAATTCGGGGGTCGGATCCTGACAGAATTCGGGGGTCGGATCCTGACAGAATTCG	Design primers
1006286	CT-TC-CG-GG-CG-GT-CG-TT-TT-GC-CG-GC-GG-TC-GT-CT-TC-CG-CG-CG-CT-CG-C	Design primers
1066248	GGCGTCGGCGTCCGAGTCGGCGTCGGACTCGGCGTC	Design primers
1087491	GCCGAGCCAGCCGAGTCAGCCGAGCTGGCCGAGTCAGTTGAGCCGGCCGAGTCA	Design primers
1104790	TATGTCCCGGTGCCGCCGGCGAGCAGCCGTCCCGGTGCCGCCGGGGAACAGCCGTCCCGGTGCCGCCGGCGAGCA	Design primers
1114951	TCCCGGTGAACCAGTCCTCGATGAACCAGTCCGCGGTGAACCAGG	Design primers
1118902	GCCGCCGCCTCCGCAGCCGCCGCC	Design primers
1129904	CTA-CGA-GGA-CTA-CGA-CGA-CTA-CGA-CGA	Design primers
1132604	CCGGCTCCGGCGACAACGGCTCCGCCGGCATCGGGTCCGGCGACA	Design primers
1137666	GCCGCGGCGGCGAAGGCCACGGTGACGAAGACCGCGGCGGTGAAG	Design primers
1137730	CGGCTGTGAAGACCGCGGCGACGAAGACCGCGGCGGTGAAGGCCG	Design primers
1137776	GGCGAAGAAGGCCGCGGCAAAGAAGGCCGCGACGAAGAAAGCCGCGGCAAAGAAGGCCGC	Design primers
1223499	TCGCGTTGGCGTTCGCGTTCGCCT	Design primers
1260306	CGCCGCCACCGCCGCCGCCGCCGG	Design primers
1296736	CGA-CGA-GGA-CGA-TGA-CGA-AGA-CGA	Design primers
1343192	CTCAGCGGACGCCGGCCTCAGCGGAGGCCGGTCTTGACGGACGCCGGCCTCGGCGCACGCGGGC	Design primers
1351837	CGCCGCGCCGGGGTTGGCCGGCTCGCCGGGGCTGGCCGGCTCGCCGGGGCTGGC	Design primers
1453786	CGACCCGGCGACGGCCAATTCCGCCGACCGGAGACGGCCAATTCCGCCAACCGGAGACGGCCAATTCCG	Design primers
1489821	CCCGGACGCGGCCTCGACGCGGCCCGGCCGCGG	Design primers
1519612	GCAGGGCAAGCCAGGGCGGGGCGGG	Design primers
1524516	GACGCGACGGGACGCGGCGCGCCGC	Design primers
1525725	CGAACTCGGCGTAGGACTCGGCGTCGAACTCGGCGT	Design primers
1539619	GCGCCTCGCCGAGCCGGGCCACGCC	Design primers
1542865	CGGCCGCCGCCGCGGCCGCGGCTG	Design primers
1547985	AGCGCCCCACATCCGCGCACCCCACATACGGGCGCCCCACATCCG	Design primers
1548165	GACGCCCCACATCCGCGCACCCCACATCCGGGCGCCCCACATCCG	Design primers
1600260	GACGCCCCGGCGGGTCGT-CTCGCCCCGGCGGCTCGT-CTCGCCCCGGCGGCTCGT-CTCGCCCCGGCGGCTCGT-CTCGCCCCGGCGGCTCGT	Design primers
1601718	CCAGCTGCGCCAGCTGCCGCAGCTGCG	Design primers
1602002	TCGGCGGCCGTGGAATA-CGAGCGGCCGTGGAATA-CGAGCGGCCGTGGAATA-CGAGCGGCCGTGGAATA	Design primers
1608276	TGCGACACCCGACGCTTTTGCGACGCCCGACGCTTTTGCCTCACCCGACGTTTT	Design primers
1624049	TTCGGTGGTTTCGGCGGTTTCGGTGGC	Design primers
1630073	CGACGGCGACGGACTTGGCGACGCAGACGGGCTTGGCGACGCAGACGGGCTTGG	Design primers
1630128	GACGGA-GACGGA-GACGGA-GACGGA	Design primers
1630173	GGCGACGGAGACGGCGACGGAGAC	Design primers
1630198	GGGACGGAGACGGGGACGGAGACG	Design primers
1632542	CGGCGACGGAGACGGGGACGGGGA	Design primers
1632571	TCGGCGACGGAG-ACGGCGACGGAG-ACGGGGACGGAG	Design primers
1632808	ACGACGACGGCGACGGAGACGGCGACGACGACGGAG	Design primers
1632862	TCGGAGAAGGAGACAAACTCGACGACGGAGACGGAGACGGACTCGACGACGGAGACGGAGACGGACTCGACG	Design primers
1637060	GGCGGCGGAGGCGGGGGCAGCGGC	Design primers
1637098	CGGGAGCGGGGGCGGCAGCGGAAG	Design primers
1653407	GCTTGCGGCGGTAGGCCGGGCGGCGGTAGGCCGGGCGGCGGTAGG	Design primers
1653481	TACATCCCGCGGCGGGTACATCCCGCGGCGGCCGCTTCCCGCGGCGGG	Design primers
1736025	CGGTCCTCCGGCCCGGTCCTGCCGATCCTGCGGCCAGGTCCTGCCGATCCTGCGGTCCGATCCTGC	Design primers
1752998	GCCGCGGACGCGGCCCCGGCCGAG	Design primers
1767293	GTGGCAGGCGTGGCCGGCGTGGCCGGC	Design primers
1788279	GTGCCGCCT-TTGCCGCCT-TTGCCGCCT	Design primers
1796740	GGACGAGCTGCCGGTAACGACGAGTTGTCGGTAACGACGAGTTGTCGGTAACGACGAACCGCCGGTAA	Design primers
1810369	TTTATCCTCCCCCACCATCCGCCGGGTGTCCTCCCCCACCATCCGTCGGGTGTCCTCCCCCACCATCCGCCA	Design primers
1823914	ACTCGATGTCGGACCTGTCCGGCTCGATGTCGGACCTGTCCAGCTCGGTGTCTGATCTGTCCG	Design primers
1887817	GGTGGCTGCGCATTTCCAGGCGCTGCGCATTTCCAGCGGCTGCGCATTTCC	Design primers
1913328	ACTCGG-GCTCGG-GCTCGG-GCTCGG	Design primers
1913950	GGTGACGGCGACGGAGACGGCGAC	Design primers
1913980	GGGCTC-GGGCTC-GGGCGC-GGGCTC-GGGCTC	Design primers
1932036	GAATCCGCCGAATCCACCGAATCCACC	Design primers
1954326	CGGAACGCCGCGGGGACGCCGCCGGGACGCCGG	Design primers
1986495	GGCGCTTCCGGTACTGATCAAGCACTTTCGGTACGGATCAAGCGCTCCCGGCACGGATCA	Design primers
1989599	CGTGACCAGGGTCAGCAGCCGTGACCAGGATCGGCAGCCGGCAGCAGGGTCAGCAGC	Design primers
1995992	GTCCCCGGCCGA-AGCCCCGGCCGA-AGCCCCGGCCGA-AGCCCCGGCCGA	Design primers
2044110	GAGGCGGTCGAGGAGGTCGAGGCGGTC	Design primers
2046407	ACGGGCCTCGTTGCCGAAGCGGCGCCTCTCGTTGCCGAAGCGGCGCCTCTCGTTGCCGAAGCG	Design primers
2151877	CGTTCGACCTGGACC-GGCTCCACCTGGACC-GGCTCCACCTGGACC-CGGTCAACCTGGACC	Design primers
2151942	CACCTGGACTGGTTCGACCTGGACTGGTTCGACCTGGACCGGCTCCACCTGGACCCGGTC	Design primers
2259499	TTTTCTGCCGTGGACGCCTGCGCCCATTTCCGCCGATGACGCCTCCGCCCATTTCTGCTGCGGACGCCTCCGCCC	Design primers
2306769	CCCGTCTCCGTCCCCGTCGCCGTC	Design primers
2306814	GTCGCC-GTCCCC-GAGCCC-GTCCCC-GTCCCC-GTCCCC-GTCCCC-GTCCCC-GTCCCC	Design primers
2306869	TCCCCG-TCGCCG-TCGCCG-TCTCCG-TCGCCG-TCTCCG	Design primers
2373180	CACCGCCCGAGCTTGATGCCGCGCCGCCCGAGCTTGGCACCGCACCGCCCGCGCTCGATGCGC	Design primers
2383864	CGCCGGGCCGAGCCGCGCCGGGCCG	Design primers
2414869	TCGGAC-TCGGGC-TCGGGC-TCGGGC	Design primers
2427237	GCTCGAGGCTCAGCTCGAGGCCCAGCTTGAGGCCCA	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

17415

GCC-GAC-GAC-GAC-GGC-GAC-GCC-GAC