Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Burkholderia cepacia AMMD chromosome 1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
26476	AGGTTGTT-GGGTTGTT-GGGTTGTT	Design primers
36274	ACGAGCACGATCGCGAGCACCAGC	Design primers
51288	CGGCGCCGGTGCCGGTGCCGGCGT	Design primers
131590	GGTCAC-GACCAC-GACCAC-GACCAC-GACCAC-GACCAC-GACCAC-GACCAC	Design primers
133964	GAAGGCCAC-GACGGCCAC-GACGGCCAC-GACGGCCAC	Design primers
134342	CGCTCGAC-AGCTCGAC-AGCTCGAC	Design primers
134370	CCACGGACCGACGGACCGACGGAC	Design primers
134395	GAACGCCC-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA	Design primers
164138	ATCGCGGCGATCGCGGCCATTGCGGCG	Design primers
187373	GCGCGGTGAACTGCGCGTTGTACTGCGCGGTCAGCT	Design primers
188670	GGTCGT-GCTCGT-GCTCGT-GCTCGT	Design primers
192441	ACCGAGCAG-CCCGAGCAG-CCCGAGCAG	Design primers
197723	CGGCGCCGGGCGGGGCCGAGCGGCAGCGGG	Design primers
201145	CCGCGCCGGCCGCACCGGCGGCGCCGG	Design primers
228068	CCCGTGCCCCGTACCCCGTGCTCCGTGC	Design primers
229438	ACCTGCGGC-ACCTGCGGC-ACCTGCGCC	Design primers
229466	CCCACGCCA-CCCACGCCA-CCCACGCCA-CCCACGCCA-CCCACGCCA-CCCACGCCA-CCCACGCCA	Design primers
229530	CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCCAC-CTGCGCGAC-CTGCGCGAC-CTGCGCGAC-CTGCGGCAC-CTGCGCGAC	Design primers
229648	TGAGCGACC-TGAGCGACC-TGAGCGACC-TGAGCGACC-TGAGCGACC-TGAGCGACC-TGAGCGACC-TGAGCGACC-TGCGCGACC	Design primers
229730	ACGCCACCC-ACGCCACCC-ACGCCACCC-ACGCCACCC-ACGCCACCC	Design primers
260704	GCCGCGTTCGCCGCGCTCGCCGCGTCC	Design primers
341291	GCGCCGCACCGCGCGACGCCGCGCC	Design primers
379169	CGCGCTCGCGCGCGCGATCGCGCT	Design primers
380803	CGCACCGGC-AGCACCGGC-AGCACCGGC	Design primers
443341	CGGGCGCGAGCGCGGCCGCGGCCG	Design primers
445352	CGGGCGCAGCCACGGCAGGCGCCGCCACAGCAGGCGCTGCCACGG	Design primers
445468	AAGGCCGATGCGAAGGCCGACACGAAGGCGGATGCC	Design primers
453264	GCCGCCGACTGAGGCCGACTGCGGTCGACT	Design primers
468831	ACGGCCACGGCACCGGCCACGGCG	Design primers
481243	CGGGCCGCCGCGCCGCCGGGCCGG	Design primers
497283	GCGCTGCAGGTCGCGCTCGAGGTCGAGCTGCTGGTC	Design primers
549644	CGGCGGCGACGGCGGCCGGGGCGG	Design primers
565444	CCGGCGAAGAAGGCCGCTGCGAAGAAGGTCGCGGCCAAGAAGGTC	Design primers
565509	CAAGAAGGTCGCTGCCAAGAAAGTCGCGGTGAAGAAGGTTGCCGC	Design primers
565568	CGGCGAAGAAGGCCGCTGCGAAGAAGGTTGCAGCCAAGAAGGTCG	Design primers
565723	GCCGCTGCGAAGAAGGCTGCGCCTGCCAAGAAGGCTGCCCCTGCGAAGAAGGCT	Design primers
568850	GGAGGGCCGGTTGGGCGGCCGGTTGGATGTCCGGTT	Design primers
568949	GTCCGGATTCGGGTGCCGATTCGGGTTCGGATACGG	Design primers
585603	CGCGCGCGCGAGCGCGGGCTCGCG	Design primers
630365	CCCCGCCGTCGACCCCACCGTCGACCCCACCGCCGA	Design primers
637442	GCCGTT-GCCGTT-GCCATT-GGCGTT-CCCGTT-CCCGTT	Design primers
665720	CCCGAACGG-ATCGAACGA-CCCGAACGA-CCCGAACGA-CCCGAACGA-CCCGAACGA-CCCGAACGA-CCCGAACGA	Design primers
665800	ACCCGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC-GAACGAGAC	Design primers
728001	GGCCGGTGCGGCCGGCGCGGCGGGTGC	Design primers
765353	GCGGTGCTGGCCGTCGCGCTGCTCGCGGTCGTGATGCTGGCCGTG	Design primers
788696	CGCAGGCGCATGCGCATGCGCGGG	Design primers
797556	CGTGCCCGACGTGCCTGACGTGCCGGA	Design primers
811557	CCCTGATCCCTCATCCCTGATTCCTGAT	Design primers
816549	GCGAACGGCACGTCGAACGGCTCGCCGAATGGCACG	Design primers
866973	TGGTGA-TCGTGA-TCGTGA-TCGTGA	Design primers
877417	GGTCGGTAACTCGGCGGTAACTCGCCGGTAACT	Design primers
966792	GGGCCGTGGGGCCCGTGGGGGCCCTGG	Design primers
972396	GCGCGGCCGGCAAGGCCGGGCCGGCAAGGCGTGGCCGGCAGG	Design primers
975699	CCCGCTGCCGAATCCGCTTCCGAACCCGCTTCCGAACCCGCTGCTGAA	Design primers
985502	TCGGCGACGAACGCGTCGGCGACGAGCCCTTCGGTGACGATCACG	Design primers
1032476	TGCA-GGCA-GGCA-GGCA-GGCA-GGCA	Design primers
1041953	CGGTCAATCCGGTGAATCCGGTCAGTC	Design primers
1053549	TGATGTTCGTGATGTTGGTGATGTTCG	Design primers
1075821	GCGGGC-GCCGGA-GCCGGA-GCCGGA-GCCGGA-GCCGGA	Design primers
1076426	GCGGCGGCCGCGGCGGCGACGGCG	Design primers
1077058	CCGGCGCGGGCGCCGGAGCCGGCG	Design primers
1096911	TCGGCTTCGGTTTCCGCTGCGGCT	Design primers
1109128	GCGGCAGCCGCAGGGGCAGCGGCG	Design primers
1129950	GGAC-CGAC-CGAC-GGGC-CGAG-CGAC-CGAC-AGAC-CGAC	Design primers
1167097	ACGCCGACC-GCGCCGACC-GCGCCGACC-GCGCCGACC	Design primers
1167134	CGTCAACCG-CGTCAACCG-CGTCAACCG-CGCCAACCG-CGCCAACCG-CGCCAACCG-CGCCAACCG	Design primers
1179415	CCCGAAGCACCCGATGCACCCGATGCA	Design primers
1190663	TCCGTGAGCGTCCGTGCGCATTCGTAAGCG	Design primers
1215992	GGCGCGATGAAGAAGGGCACGATGAAGAAGCATGCGATGAAGAAG	Design primers
1221314	GCGGCCACGCAGCCACGCGGCCAA	Design primers
1221339	TGGCCAAG-TAGCCAAG-CAGCCAAG-CAGCCAAG-CAGCCAAG-CAGCCAAG-CAGCCAAG-CAGCCAAG	Design primers
1221404	GACCAAGC-AGCCACGC-GACCAAGC-GGCCAAGC-GGCCAAGC-GGCCAAGC-GGCCAAGC-GGCCAAGC	Design primers
1221469	ATCAAGCG-ATCAAGCG-ATCAAGCG	Design primers
1223047	CGCGAGCGCGCGCGCCAGCGCGAC	Design primers
1248923	GGCGTCGAAGCAGCCGACGTCGAAGCGGCCGATGTCGAAGCGGCCGGCGTCGAAGCGCCCCGCATCGAATCAGCCGACGTCGAAGCAGCCGGCATCGAAGCGGCCGACGTCGAAGCAGCCGGCATCGAAGCAGCGAGCGTCGAAGCAGAA	Design primers
1274046	CGGCCAAGGCGGCCCCCGCGAGGGCGGCCCCCGCGAAGGCGGCGC	Design primers
1277478	ATCCTGTTCTTCATCTCGTTCTTCATCCAGTTCGTC	Design primers
1348956	CATGTACC-GCCGTGCC-GCCGTGCC-GCCGTGCC-GCCGTGCC-GCCGTGCC-GCCGTGCC-GCCGTGCC-GCCGTGCC	Design primers
1365661	CGCGATCACGATCGCGAGCGAGAT	Design primers
1382001	GCGCGGGCGAGGGCGAGGGCACGG	Design primers
1385837	CTCGCGTTCGCGCTGGCGCTCGCG	Design primers
1424081	GCTAGTGCGGCTAGTCCGGCTCGTGCG	Design primers
1430311	ACGTTCCTG-ACGTTCCTG-ACGATCCTG	Design primers
1442784	GGAGCGGATGCTGCGGCAGCCGATGCTGCGGCAGCCGACGCTGCG	Design primers
1463335	CGACGGATGGTCGCCCGACGGATGGCCGTCCCACGGATGGCCGTC	Design primers
1470950	GCGCACAGGCTCACAGGTGCACAG	Design primers
1472778	GCCGCCGACGCCGGCGCCGCAGCC	Design primers
1500989	AGCGCGACTGAGCGTCACTGAGCGCGACGC	Design primers
1542641	CCACTCGTCGTTCCGCTGGTGCTGCCGCTCGTCGAACCGCTCGTGCTGCCGCTGGTCGAGCCGCTGGTGCTG	Design primers
1577488	CCACCGTTA-CCACCGTTA-CCACCGTTG	Design primers
1609715	CCGATTCCGCTTCCGTTTCCGATT	Design primers
1626505	ACCACGGCACCACGGAATCACGGCACCACGGA	Design primers
1636355	CCGAGCCCGAACCCCAGCCCGAAC	Design primers
1643919	TCGCGCTCGCCCGCGCGCTCGCGGTCGAGC	Design primers
1711423	GCGTCGATGCGCCGATGCGTCAAT	Design primers
1727845	CGGCGA-CGGCGA-CCGCGA-CCGCGA-CCGCGA	Design primers
1728708	CGGCTGAT-CGGCTGAT-TGGCTGAT-TGGCTGAT-TGGCTGAT	Design primers
1728749	CGGTTGAC-CGGTTGAC-CGGTTGAT	Design primers
1736307	GACTTCACCACTTCACGACGTCACGACTTCAC	Design primers
1738909	CTTCGC-CATCGC-CATCGC-CATCGC	Design primers
1738934	ATCGACAACGCCTTCGCC-TTCGACAACGCCTTCGCC-TTCGACAACGCCTTCGAC	Design primers
1742253	CATCGGCGGCATTGGCGGCATCGGCGGCATCGGCGG	Design primers
1748800	CGGATAGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC-AGAAACGC	Design primers
1754182	GACCCATGCAACTGACGAATGCAACTCACCCATGCAACG	Design primers
1754510	CGGGGGGCGGCCATCCGGGGGCCGGCAACCCGGGGGCAGGCCAAC	Design primers
1777218	CTCGTTTG-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA	Design primers
1777453	ATCCGCCTATCCGCGTATTCGCCT	Design primers
1781407	GCATCAGCACCGGCACCGGCACCGGCATCAGCAGCG	Design primers
1873948	TTGTCCGGCTTGGCCGGCTTGGCCGGC	Design primers
1907040	TTCTGCATCTGCTCCTGCATCTGC	Design primers
1950413	CCCGACCTCGACCGCGACCTCGAC	Design primers
1956057	CGCTCGAGCTCGCGTTCGCGCGCG	Design primers
1971200	GCGACGACGTCGGCAACCACGTCGGCCACGACGTCG	Design primers
1986888	GCGCCGGGCATCCGG-GCGCCGGGCATCCGG-GCGCCGCGAACCCGG	Design primers
2006384	GCGCGGGCGCAGCGCGAGTGCAGCGCGGGCGCT	Design primers
2119417	CCGGGCATGCCGGCACCGGGCGTACCGGCAGCGGGCGTACCGGCACCGGGCATGCTGGCA	Design primers
2124466	GTGGCGCTGGCGGCGGCGGTCGCG	Design primers
2134883	TCGTCGTCGCCGTTGTCGTCATCG	Design primers
2159733	GCGGCGCTGCGCGACGCCGCGTGGC	Design primers
2179602	TGTCCC-CTGCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC-TGCCCC	Design primers
2236087	GCTGCCGGCGATGCCGGCGCTGCCCGC	Design primers
2278569	GCGCCGGATACGCCGGATACGCCGGATACGCCGGATGCACCGGAT	Design primers
2301564	GCCGGCGCATAAACGGGCGCCGGTGCATACACAGGCGCCGGTGCATACACGGGC	Design primers
2341246	TCGGCTGCTGCTTCGTCGGCTGCTTCGGCAGTTGCT	Design primers
2357959	CAGCGCGCCGGCGCGCCAGCCCGC	Design primers
2385732	CGACAG-CGACAG-CGGCAG-CGTCAG	Design primers
2418912	GCGCTTGTGCTTGCGCTCGCGCTT	Design primers
2434644	GCCGCCCATGCCGCCCAGGCCGCCCGT	Design primers
2441843	TCGCCGTCCTCGCCCTTTTCGCCCTTTTCGCCCTTTTCGCCGTTCTCGCCGTTC	Design primers
2564717	CGACCG-CGACCG-CGAACG-CGACCG	Design primers
2577700	GTACCGGCAGCACCGGCAGCACCGGCA	Design primers
2579220	CCG-CCG-CCT-CCG-CCG-CCG-CCC-CCG	Design primers
2589009	CGGCGACGCGGCAACGCGGCAACG	Design primers
2589128	CGGCGGG-TGGCGGG-TGGCGGG-TGGCGGG-TGGCGGG	Design primers
2589632	GCGTCGCCGTCGGCGCCGGCGCCG	Design primers
2598042	GCCGC-GGCGC-GCCGC-GCGGC-GCCGC	Design primers
2602429	CCGGAGCGACCGTAGCGACCGTAGCGA	Design primers
2602507	CGGCATCGG-CTGCATCGG-CTGCATCGG-CTGCATCGG	Design primers
2603778	GCCGCGCCCTCTGCGCCCTCTGCGCCCTCTGCGACCTCTGCGACCTCTGCGCCCCCCGCGACCTCTGCGACC	Design primers
2614974	GCCGCCCATGCCGCCCCTGCCGCCCAC	Design primers
2615030	CCCGCCCCCGCGCCCACCGCCGCC	Design primers
2622080	GCCAGCCGCCCAGCCGGCCAGCAG	Design primers
2679588	GTCGATGAA-GTCGATGAA-GTCGATGCA	Design primers
2682367	GGGGCGGCGGCGGTGGCGGGCGCG	Design primers
2710041	CGCGCGCGAGCGCGTGCGCGCACG	Design primers
2727268	CGCGTCCGCGTGCGCGGCCGCATC	Design primers
2728138	CGCCCGTGCCTGCGTCCGTGCCTACTTCCGTGCCTGCGTCCGTGCCTGCGCCTGTGCCCG	Design primers
2728217	GCCTACGCCCGTGCCTGCGCCAGTGCCTGCGCCCAT	Design primers
2771654	CGATGTTCGCGATGTCCGCGAAGTTCG	Design primers
2776198	ACGCGACGCTGCGCGACACGCCGCG	Design primers
2779852	CGGCGGCGGCGCGGCGGCGGAACAGCGGCGCCG	Design primers
2835600	AGCTGCTTCGGCTGCTGCTCCGGCAGCTGCTTCGGC	Design primers
2840618	GGTGGCGGCACTTCG-GGTAACGGCGCTTCG-GGTGGTGGTACTTCT-GGTAGTGGCACTTCT-GGCGGCGGCACTTCT-GGTGGCGGTACTTCG-GGTGGCGGTACTTCG-GGCGGTGGCACTTCC-GGCGGCGGCACTTCG-GGTGGCGGTACTTCG-GGTGGCGGTACTTCG-GGTGGCGGTACTTCG-GGTGGCGGCACTTCG-GGTGGCGGCACTTCG-GGTGGCGGCACTTCG-GGTGGCGGTACCTCG-GGCGGCGGTACCTCG-GGTGGCGGTACCTCG-GGTGGCGGTACCTCG-GGTGGCGGTACCTCG-GGTGGCGGTACCTCG-GGTGGCGGTACTTCG-GGTGGCGGTACCTCG-GGTGGCGGCACTTCG	Design primers
2841047	GGTAACGGTGGCGGTCACGGCGGCGGTCACGGCGGC	Design primers
2841125	CACGGTGGCGGC-AACGGTGGCGGC-AACGGCGGCGGC-AGCGGTGGCGGC	Design primers
2841185	CACGGCGGCGGCAACGGTGGCGGC-AACGGCGGCGGTCACGGCGGCGGC-AACGGTGGCGGCAACGGCGGCGGC-AACGGTGGCGGCAACGGCGGCGGC-AACGGTGGCGGCAACGGTGGCGGC-AACGGTGGCGGCAACGGCGGCGGT-CACGGCGGCGGC	Design primers
2841371	CACGGC-AACGGC-AACGGC-AACGGC	Design primers
2841396	ACGGTG-GCGGTG-GCGGTG-GCGGTG-GCGGTG	Design primers
2841427	CGGCGGCGG-CGGCGGTGG-CGGTGGCGG-TGGCGGTGG-CGGTGGCGG-TGGCGGCGG-CGGCGGCGG-CGGCGGCGG-CGGTGGCGG-TGGCGGTGG-CGGTGGCGG-CGGCAGCGG-CGGCAGCGG-CGGCGGCGG-CGGCAGCGG-CGG	Design primers
2841567	GCGGCGGCAGCGGCGGCGCCGGCGGCAGCG	Design primers
2841729	GCGGCGGAGGCGGCGGAGGCGGCAGCGGTG	Design primers
2846768	GTCCACCCGGTGCCGGTATGCCCGGTGCCGGTACGCCCGGTGCCGGTACGCCCAGTGCCGGTACGCCCGCTGCCG	Design primers
2916031	AGCACGATCACGAACACGAGGACG	Design primers
2926440	GCGGCGGCACCCGACGCGGCAGCGCCCGACGCACCAGCACCCGACGCAGCGGCGCCCGAG	Design primers
3089406	AGGCGCGTGGTTCGGCGCGTGGTTGGGCGCGTCGTT	Design primers
3109404	TGCGCCCGA-AGCGCCCGA-AGCGCCCGA	Design primers
3111595	GACGCCGACGCAGCCGCCGCCGCCGACGCT	Design primers
3139661	TCGTCGTCGTCCGCGTCGTCGGCG	Design primers
3141093	CGAGCGCGACCGCGAGCACGAGCG	Design primers
3150789	CGCGTCTG-AGCGTCTG-AGCGTCTG	Design primers
3176184	GAGCGGCTGACCGGCTGACCGGCT	Design primers
3176209	ACCGCCGACCGCTG-ACCGCCGACCGCTG-ACCGCTGACCGCCG-ACCGCCGACCGCTG	Design primers
3176266	GCGGCTGA-GCGGCTGA-CCGGCTGA-GCGGCTGA-GCGGCTGA-GCGGCTGA-GCGACTGA	Design primers
3221195	TCGTTCTTCGCAGTCCCCCGCTCTTCGCAGTTCCTCGCTCTTCGCAGTTCG	Design primers
3247398	CGACACGGTGCAATACGGTGCGACGCGATG	Design primers
3248633	CTCAGCGCATCAGCGCCGCAGCGC	Design primers
3258806	TGAACGAC-TGAACGAC-TGAACCAC	Design primers
3294161	CGCCAGCGCGACGCCCGCCCGACGCCCGCCCGA	Design primers
3315527	CGAACGACTCGTCGGACGACTCGTCGGACGACCCGT	Design primers
3372776	TGCTGCTGGTGCTGCTGGTGCTGA	Design primers
3372801	GTTGCTGGC-GGTGCTGGC-GGTGCTGGC-GGTGCTGGC	Design primers
3377876	CGGCCG-CAGCCG-CAGCCG-CAGCCG	Design primers
3377901	AAGCCGT-AAGCCGT-AAGCCGT-AAGCCGT-AAGCCGT-AAGCCGT-AAGCCGT-GAGCCGT-GAGCCGT-AAGCCGT-AAGCCGT-GAGCCGT	Design primers
3383062	CGCCGGCCGCGCCCAGGCCCGCCGCACCCAGCCCGGCCGCGCCGA	Design primers
3392507	CGTACCGGTCACGCCGGCGCTCCGACGCGCCGATCACGCCAACGCTCCGACGTACCGATCACGCCGACGCTCTGACGTACCGATCACGCCAACGCTCCGA	Design primers
3402703	CGCCG-CGCCG-CGCGG-CGCCG-CGCCT	Design primers
3423685	GCCGCGACGCGCCGCGTCGCTCCGC	Design primers
3432162	TCC-GCC-GCC-GCC-CCC-GCC-GCC-GCC	Design primers
3432190	GACGCG-GCCGCG-GCCGCG-GCCGCG	Design primers
3445414	CCGCAGCGGGCGACCGGCTGCGGGCGACCGGCTGCGGGCGAC	Design primers
3451123	CGCGCTGCTCGCGCTGCGCGCGCCGCT	Design primers
3457874	TCGTTGGTG-CCGTTGGTG-CCGTTGGTG-CCGTTGGTG-CCGTTGGTG	Design primers
3500967	CGAGAAAGCGGAGAAAGCCGAGAAGGC	Design primers
3509771	CGCGGCCGCGGACGCGACCGCCGC	Design primers
3522659	CACCGGCCCGCAAGACCGCCGCCCGCAAGACGACGGCGCGCAAGA	Design primers
3545338	CGCGCAGCGCGGCGCCGCGCTGCGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

26476

AGGTTGTT-GGGTTGTT-GGGTTGTT