Microsatellites /Tandem Repeats database

Genome: Burkholderia cepacia AMMD chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
26477GGTTGTTG-GGTTGTTG-GGTTGTTGDesign primers
131592TCACGA-CCACGA-CCACGA-CCACGA-CCACGA-CCACGADesign primers
133967GGCCACGAC-GGCCACGAC-GGCCACGACDesign primers
134343GCTCGACA-GCTCGACA-GCTCGACADesign primers
134372ACGGACCG-ACGGACCG-ACGGACCGDesign primers
134397ACGCCCGA-ACGCCAGA-ACGCCAGA-ACGCCAGA-ACGCCAGA-ACGCCAGA-ACGCCAGA-ACGCCAGADesign primers
229460GCGCCACCC-ACGCCACCC-ACGCCACCC-ACGCCACCC-ACGCCACCC-ACGCCACCCDesign primers
229523ACGCCACCT-GCGCCACCT-GCGCCACCT-GCGCCACCT-GCGCCACCT-GCGCCACCT-GCGCCACCT-GCGCCACCTDesign primers
229596CGCCACCTGCGCGACCTGCGCGACCTGCGCGACCTGCGGCACCTGCGCGACCTGDesign primers
229651GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGADesign primers
229726ACCCACGCC-ACCCACGCC-ACCCACGCC-ACCCACGCC-ACCCACGCCDesign primers
665730TCGAACGAC-CCGAACGAC-CCGAACGAC-CCGAACGAC-CCGAACGAC-CCGAACGAC-CCGAACGAC-CCGAACGACDesign primers
665803CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAA-CGAGACGAADesign primers
866975GTGATC-GTGATC-GTGATC-GTGATCDesign primers
877418GTCGGTAACTCGGCGGTAACTCGCCGGTAACTCDesign primers
1032477GCAG-GCAG-GCAG-GCAG-GCAG-GCAGDesign primers
1075824GGCGCC-GGAGCC-GGAGCC-GGAGCC-GGAGCC-GGAGCCDesign primers
1167098CGCCGACCG-CGCCGACCG-CGCCGACCG-CGCCGACCGDesign primers
1167135GTCAACCGC-GTCAACCGC-GTCAACCGCDesign primers
1167163CCAACCGCG-CCAACCGCG-CCAACCGCG-CCAACCGCGDesign primers
1221341GCCAAGTA-GCCAAGCA-GCCAAGCA-GCCAAGCA-GCCAAGCA-GCCAAGCADesign primers
1221418GCGACCAA-GCGGCCAA-GCGGCCAA-GCGGCCAA-GCGGCCAA-GCGGCCAADesign primers
1221467CGATCAAG-CGATCAAG-CGATCAAGDesign primers
1248935GCCGACGTCGAAGCGGCCGATGTCGAAGCGGCCGGCGTCGAAGCGDesign primers
1348959GTACCGCC-GTGCCGCC-GTGCCGCC-GTGCCGCC-GTGCCGCC-GTGCCGCC-GTGCCGCC-GTGCCGCCDesign primers
1442790GATGCTGCGGCAGCC-GATGCTGCGGCAGCC-GACGCTGCGGCAGCCDesign primers
1728717GGCTGATT-GGCTGATT-GGCTGATTDesign primers
1728748CCGGTTGA-CCGGTTGA-CCGGTTGADesign primers
1738911TCGCCA-TCGCCA-TCGCCA-TCGCCADesign primers
1748803ATAGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGA-AACGCAGADesign primers
1777225GCTCGCTG-ACTCGCTG-ACTCGCTG-ACTCGCTG-ACTCGCTG-ACTCGCTGDesign primers
1873952CCGGCTTGG-CCGGCTTGG-CCGGCTTGGDesign primers
2179609TGCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCT-GCCCCTDesign primers
2278570CGCCGGATA-CGCCGGATA-CGCCGGATADesign primers
2441852TCGCCCTTT-TCGCCCTTT-TCGCCCTTTDesign primers
2589129GGCGGGT-GGCGGGT-GGCGGGT-GGCGGGT-GGCGGGTDesign primers
2602433AGCGACCGT-AGCGACCGT-AGCGACCGTDesign primers
2602509GCATCGGCT-GCATCGGCT-GCATCGGCT-GCATCGGCTDesign primers
2603781GCGCCCTCT-GCGCCCTCT-GCGCCCTCTDesign primers
2840741GGCGGCACTTCGGGT-GGCGGTACTTCGGGT-GGCGGTACTTCGGGT-GGCGGTACTTCGGGT-GGCGGCACTTCGGGT-GGCGGCACTTCGGGT-GGCGGCACTTCGGGTDesign primers
2840847GCGGTACCTCGGGCG-GCGGTACCTCGGGTG-GCGGTACCTCGGGTG-GCGGTACCTCGGGTG-GCGGTACCTCGGGTG-GCGGTACCTCGGGTGDesign primers
2840938CGGTACTTCGGGTGGCGGTACCTCGGGTGGCGGCACTTCGGGTGGDesign primers
2841126ACGGTGGCGGCA-ACGGTGGCGGCA-ACGGCGGCGGCA-GCGGTGGCGGCADesign primers
2841215GGCGGTCACGGCGGCGGCAACGGTGGCGGCAACGGCGGCGGCAACGGTGGCGGCAACGGCGGCGGCAACGGTDesign primers
2841288GCGGCAACGGTG-GCGGCAACGGTG-GCGGCAACGGCGDesign primers
2841372ACGGCA-ACGGCA-ACGGCA-ACGGCADesign primers
2841397CGGTGG-CGGTGG-CGGTGG-CGGTGG-CGGTGGDesign primers
2841428GGCGGC-GGCGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGC-GGCGGC-GGCGGC-GGCGGC-GGCGGC-GGTGGC-GGTGGC-GGTGGC-GGTGGCDesign primers
2841525GCGGCAGCGGCGGCAGCGGCGGCGGCGGCGGCAGCGGCGGTAGCGGCGGCAGCGDesign primers
2846773CCCGGTGCCGGTATGCCCGGTGCCGGTACGCCCGGTGCCGGTACGDesign primers
3089407GGCGCGTGGTTCGGCGCGTGGTTGGGCGCGTCGTTCDesign primers
3109405GCGCCCGAA-GCGCCCGAA-GCGCCCGAADesign primers
3150790GCGTCTGA-GCGTCTGA-GCGTCTGADesign primers
3176187CGGCTGAC-CGGCTGAC-CGGCTGACDesign primers
3176215GACCGCTGACCGCCGACCGCTGACCGCTGACCGCCGACCGCCDesign primers
3176261GCTGAGCG-GCTGAGCG-GCTGACCG-GCTGAGCG-GCTGAGCG-GCTGAGCGDesign primers
3372803TGCTGGCGG-TGCTGGCGG-TGCTGGCGG-TGCTGGCGGDesign primers
3377896GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAADesign primers
3392536CCGATCACGCCAACGCTCCGACGTACCGATCACGCCGACGCTCTGACGTACCGATCACGCCAACGCTCCGACGCGDesign primers
3445416GCAGCGGGCGACCGGCTGCGGGCGACCGGCTGCGGGCGACCGDesign primers
3457875CGTTGGTGC-CGTTGGTGC-CGTTGGTGC-CGTTGGTGC-CGTTGGTGCDesign primers

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