Microsatellites /Tandem Repeats database

Genome: Burkholderia cepacia AMMD chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
26477GGTTGTTG-GGTTGTTG-GGTTGTTGDesign primers
131593CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGAC-CACGACDesign primers
133967GGCCACGAC-GGCCACGAC-GGCCACGACDesign primers
134343GCTCGACA-GCTCGACA-GCTCGACADesign primers
134372ACGGACCG-ACGGACCG-ACGGACCGDesign primers
134403GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCA-GAACGCCADesign primers
229461CGCCACCCA-CGCCACCCA-CGCCACCCA-CGCCACCCA-CGCCACCCA-CGCCACCCA-CGCCACCCADesign primers
229525GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGC-GCCACCTGCDesign primers
229607CGACCTGCG-CGACCTGCG-CGACCTGCGDesign primers
229642GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGA-GCGACCTGADesign primers
229726ACCCACGCC-ACCCACGCC-ACCCACGCC-ACCCACGCC-ACCCACGCCDesign primers
665731CGAACGACC-CGAACGACC-CGAACGACC-CGAACGACC-CGAACGACC-CGAACGACC-CGAACGACC-CGAACGACCDesign primers
665804GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAAC-GAGACGAACDesign primers
866975GTGATC-GTGATC-GTGATC-GTGATCDesign primers
1032477GCAG-GCAG-GCAG-GCAG-GCAG-GCAGDesign primers
1075827GCCGGA-GCCGGA-GCCGGA-GCCGGA-GCCGGADesign primers
1167098CGCCGACCG-CGCCGACCG-CGCCGACCG-CGCCGACCGDesign primers
1167135GTCAACCGC-GTCAACCGC-GTCAACCGCDesign primers
1167163CCAACCGCG-CCAACCGCG-CCAACCGCG-CCAACCGCGDesign primers
1221348AGCCAAGC-AGCCAAGC-AGCCAAGC-AGCCAAGC-AGCCAAGC-AGCCAAGC-AGCCAAGCDesign primers
1221422CCAAGCGG-CCAAGCGG-CCAAGCGG-CCAAGCGG-CCAAGCGGDesign primers
1221463CAAGCGAT-CAAGCGAT-CAAGCGATDesign primers
1348962CCGCCGTG-CCGCCGTG-CCGCCGTG-CCGCCGTG-CCGCCGTG-CCGCCGTG-CCGCCGTG-CCGCCGTGDesign primers
1728717GGCTGATT-GGCTGATT-GGCTGATTDesign primers
1728748CCGGTTGA-CCGGTTGA-CCGGTTGADesign primers
1738911TCGCCA-TCGCCA-TCGCCA-TCGCCADesign primers
1748806GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAAC-GCAGAAACDesign primers
1777226CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGA-CTCGCTGADesign primers
1873952CCGGCTTGG-CCGGCTTGG-CCGGCTTGGDesign primers
2179611CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGC-CCCTGCDesign primers
2278570CGCCGGATA-CGCCGGATA-CGCCGGATADesign primers
2441852TCGCCCTTT-TCGCCCTTT-TCGCCCTTTDesign primers
2589129GGCGGGT-GGCGGGT-GGCGGGT-GGCGGGT-GGCGGGTDesign primers
2602433AGCGACCGT-AGCGACCGT-AGCGACCGTDesign primers
2602509GCATCGGCT-GCATCGGCT-GCATCGGCT-GCATCGGCTDesign primers
2603781GCGCCCTCT-GCGCCCTCT-GCGCCCTCTDesign primers
2840747ACTTCGGGTGGCGGT-ACTTCGGGTGGCGGT-ACTTCGGGTGGCGGTDesign primers
2840793CTTCGGGTGGCGGCA-CTTCGGGTGGCGGCA-CTTCGGGTGGCGGCADesign primers
2840861GGCGGTACCTCGGGT-GGCGGTACCTCGGGT-GGCGGTACCTCGGGT-GGCGGTACCTCGGGT-GGCGGTACCTCGGGTDesign primers
2841222ACGGCGGCGGCAACGGTGGCGGCA-ACGGCGGCGGCAACGGTGGCGGCA-ACGGCGGCGGCAACGGTGGCGGCADesign primers
2841372ACGGCA-ACGGCA-ACGGCA-ACGGCADesign primers
2841397CGGTGG-CGGTGG-CGGTGG-CGGTGG-CGGTGGDesign primers
2841437GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
2841474GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCG-GCGDesign primers
2841502TGGCGG-TGGCGG-TGGCGG-TGGCGGDesign primers
3109405GCGCCCGAA-GCGCCCGAA-GCGCCCGAADesign primers
3150790GCGTCTGA-GCGTCTGA-GCGTCTGADesign primers
3176187CGGCTGAC-CGGCTGAC-CGGCTGACDesign primers
3176283CGGCTGAG-CGGCTGAG-CGGCTGAG-CGGCTGAGDesign primers
3372803TGCTGGCGG-TGCTGGCGG-TGCTGGCGG-TGCTGGCGGDesign primers
3377896GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAA-GCCGTAADesign primers
3445419GCGGGCGACCGGCT-GCGGGCGACCGGCT-GCGGGCGACCGGCTDesign primers
3457875CGTTGGTGC-CGTTGGTGC-CGTTGGTGC-CGTTGGTGC-CGTTGGTGCDesign primers

Please help us improve this resource by reporting problems, suggestions etc.