Microsatellites /Tandem Repeats database

Genome: Clostridium perfringens ATCC 13124

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
22722ATAATTGTAAATATAACTATAAATGTAATTGTGAATDesign primers
23057GAAAGACCTGAAAGACCAGAAAAACCTDesign primers
61151AATATTAATTTTAAGATTAATATTDesign primers
95433AAAACATAAAGAAAACAAACAGAAAACAAATAGDesign primers
111371AAAATAACTAAAAACAACTAATAACAACTADesign primers
134655GAAATTGAATTTGAAAATGAAAGTDesign primers
170063GTGACGGAGTTGTGACGTATTTTTGACGGAGTTDesign primers
186629TTAATTAAAGTAAATAAAAGCTAATTAAAGDesign primers
191371TATTCATCAAATATACATCATATATTCAATAAADesign primers
229891AATTTAATCTAATATAATTAAATTADesign primers
231048AATATAGTATAAAATAATACAATATDesign primers
237584GAATTAATAGAATAATTGTAAAGAATAGAATAATTGGAAAGAATAGAATAAGTGDesign primers
237647AAGATGTGGAAATTTGAAGAAGTAGAAAATTGAAGAAGTAGAAAATTGDesign primers
315926TATAATTTATATTTTTAATTTATACTTTGAATTTATATTDesign primers
316789TTTTTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTADesign primers
350168AAATATGAATATAAATGTTAATATDesign primers
435855GGAGAAGATGGAGAGGATGGAGAATATDesign primers
470172ATAATATATTAAAATATAAGATTATDesign primers
470413AAAAAATAAAAAATAAATAAAAAATDesign primers
501046AAAATAAATTAATATATATTATAATAACTTDesign primers
502799ATAAGAGAAAATAAAAGATAAATAGAGAAAATAATATAAADesign primers
531358TATATATAGAATATATACAGTATATACACAGAADesign primers
578437TTGAACTTGAAATGGAACTTGAAADesign primers
607816AAAGAAAACTTAAAGAAAAACTTAAAAGAAATGTTADesign primers
623507AATAGAAAAAATAGAGAAAATAGAAGADesign primers
675967CAACCAAAAACAATCAAAATCAATAAAAAACATTCAAAAADesign primers
678770TATAAGTAGTTTTAAGTAATTATAAGTTTTDesign primers
689220TAAAATATAAAACACAAAATATTAAATADesign primers
697749AATAAAATATATTAAAATTAATTAADesign primers
705748ATTAT-ATTAT-ATCAT-AATAT-TTTATDesign primers
769540TTATATTCAAATATATTAAATTATAATTAADesign primers
780652TACTAATACAAATGCTAATATTAADesign primers
815847TATAAGATATTATTTTTAAGATATTATTTTTAAGATGTTATTDesign primers
835329ATAAATTAAAATAGATTAGAGAAAATTAAADesign primers
842840AGATAAAAATAAGGATAAAGATGADesign primers
845951AGAATATATAAAATAATATAAAAAATAAAATATAAADesign primers
853108ATATAATAATAAATAAGAATAAATGATAATDesign primers
974425AATAAAAATAATATTAAAAATAAGDesign primers
986749TATATTATTTTATAAAATATTATAADesign primers
993332ATATTAAATTA-ATATTAAATTA-GTATTAACTTA-ATGTTAACTTADesign primers
1036426TTATATTATGTCATATTAGACTATADesign primers
1089342TTATAGTTTTATATTTTAATAGTTDesign primers
1096734TGAAAAAACCATAAAAAAACCACAAAAAAACCADesign primers
1096843AATGAAAAGAATGAGAAGAATGAAAAADesign primers
1097185AA-AA-GA-AA-AA-TA-GA-AA-GA-AA-TA-GADesign primers
1139244TAATAATTAATAGTAGTTAATAATATTTACDesign primers
1151990TT-TT-TA-TG-TT-TT-TT-AT-TT-TG-TT-TA-TG-TDesign primers
1163375AGG-AGG-AGG-CGG-TGG-AGG-AGG-TGGDesign primers
1184893AAGGCATCTAAA-AAGGCATCTAAA-AAGACATTTAAADesign primers
1185307TAAAAATGATAATAATGATAAAAAGGADesign primers
1201687GAGATTATATGAGAATAAATGAGATTATAADesign primers
1245433TTAATTTTATATAATTTTATTTAAADesign primers
1286406AAGAAAATAAAAGTAATGAAGAGAADesign primers
1333941TTTTTATAGTTTATTTTAGTTGTTTTTAGTDesign primers
1363757TTAGATGAATTAATAGAAGAATTATTAGAAGAATAADesign primers
1367634CCTTGAGGACCTTGAGGGCCTTGTGGADesign primers
1379170AGGATTAGGGTTAGGATTAGCATTDesign primers
1385800ATTAAAAAAATTAATAAAATTAAAAAADesign primers
1408018TAAAATTATCAAAATTATTTAAATTATDesign primers
1411673TCCTCCACCACCGCCGCCACCGCCACCACCGCCACCTCCGCCACCACCGCCGGCDesign primers
1411907AATTTAATATAATGTAATTAAATTTDesign primers
1426392AATTTGAATTTAACTTTGAATTTTDesign primers
1435547GAATAAACATGAATATAGATGAATTAACAADesign primers
1487719AAAAGAATAAATAAAAAAATATATAAAATAATAAATDesign primers
1514482AAAAGGATTTTAAAAAGAATTTAAATAAGGATTTTADesign primers
1527862ATTTCTTAAGTATTATTTATTGAGTATTATTTATTGAGTATTDesign primers
1540900TCTTTAAAATCTTTAGAATCTTTAAAGDesign primers
1564639TTATTAATAATTATTATAAATTATTATTACDesign primers
1568156TTTTTTATTTTTATTTTTATTTTTTTTATTDesign primers
1574244AATATTTTATTAATATTTAGTTAATAATTTATTDesign primers
1622759ATTTTTCTATTTTTTTCTATATTTTATTATDesign primers
1622947ACAGCA-ACAGCA-ACTGCA-ACAGTADesign primers
1650967ATTTTATTTATTATTATTTAATTTTATTCCDesign primers
1658792TTTATTTTCTTTTAATTTCTTTTCTDesign primers
1659194AAAATCCGTCACAAGTCCGTCACAACTCCGTCADesign primers
1766001TT-TT-TT-AT-TT-TA-TT-TT-TT-CT-TT-CT-TDesign primers
1810645TTTTGAATATAATATTAAATATAATATTAAATATAADesign primers
1816401GTAATAATACTA-GTAATAATACTA-GTAATACTAATADesign primers
1816484ACT-AAT-AAT-AAT-AAT-AAT-AAT-AATDesign primers
1847247TTTTATTTATATTTTTAAATTTATDesign primers
1855853ACCACAGTTATTTCCGAATCCTCCGCAGTTATTTCCAAAGCCACCACAATTGTTTCCAAATCCDesign primers
1860916TTTCTTTTTCATTTTCTTTTTCTADesign primers
1871285ATATTATATCACATTTTATTTTATTATTTTDesign primers
1927312ATTTTTTTATTTTCTTATTATTTTDesign primers
1997380AATTTTTAAATTTTAATCTTTCATTTTTDesign primers
2049992TATATATTAAATATATTATATATGTTADesign primers
2137641AAATATATAAAAATATAAATATAGDesign primers
2146486ATTATATC-ATTATATC-ATTATTTCDesign primers
2350194TT-TT-TT-TT-AT-TT-TT-TT-AT-CT-TT-TTDesign primers
2393144TTAAATTAATTAAAATTTAATTACADesign primers
2394985TTTTTTATTTTTTTCTTCTTTTTCTDesign primers
2421003ATAGAAAAAGAAAGAGAACTAGAADesign primers
2435312TAATATATTATATTATTATATAACADesign primers
2446507GGATTTTCTGGATTTTCAGGTTTTTCTDesign primers
2475954TTA-TTA-TTA-TAA-TTC-TTA-TTA-TTT-TTA-TTADesign primers
2496580CCATAT-CCATAT-CCTTAT-GCATATDesign primers
2512792TTCTTCCTCCTCTTCCTCTTCTTGCTCDesign primers
2622938ATTTAT-ATTTAT-ATCTAT-ATTTCTDesign primers
2640359ATTTTAATTTTCCTTTTAAGTTTADesign primers
2648378AAAAAGAATAAGAAATAGAAAAAADesign primers
2695446TATTATTATACTATTATATTATTADesign primers
2708317AATTTTATTTAAGTTAAATTTATTTDesign primers
2741442ATTATTATAATTACTATTATTGTTATTATAATTATTDesign primers
2766867TTTTTGTGTCATTTATATGTCATGTTTATGTCATTTCTATGTCADesign primers
2795851TTTCTTTGATTTATTTCCTTGATTTATTCCTTTAATTTADesign primers
2807777TCTTCTTTAATTTCATCTTTATTTATTTCATCTTTATTCATTTCADesign primers
2811862TTTTCAAATTTTCAACTTTTAAAADesign primers
2816788TTAAATTAATAAATTATTAAAATADesign primers
2844070TATCATTAGCATTATTATTATCACDesign primers
2866476TCT-TTT-GTT-TTC-TCT-TCT-TCT-TTT-TDesign primers
2912431TTTTAACT-ATTTAACT-ATTTAACTDesign primers
2942687AATTAAAACTAAATTTAATATTAADesign primers
3000419TATTAAATTTTCTTAAATCTTATAAAATTADesign primers
3010769TTTTTTCTTTGTTTTATTTTTTATTDesign primers
3028289TTATAACTTATTTTTCTATACCTTATTTTTTTATACATTACTTTTDesign primers
3101155TATTAATATAAATATTGATATAAADesign primers
3103356TTATCTTTATCCGTATCTTTATCCTTATATDesign primers
3103617TCTTTATCCTCTTTATCTTCTGTATCCDesign primers
3141897AATTTAAA-TATTTAAA-TATTTAAADesign primers
3159647TTATACTTTTTATACTTCTTATAGTTTDesign primers
3199139TCTCCTGGTTTTTGTTCTTCACCTGGCTTTTGCTCTTCACCTGGTTTTTGCTCATCTCCTGGTTTTTGTTCTTCACCTGGCTTTTGCTCTDesign primers
3199238TTTTGCTCATCTCCTGGCTTTTGTTCTTCACCTGGCTTTTGCTCTTCACCTGGTTTTTGTTCATCTCCTGGTTTTTGTTCATCTCCTGGCTTTTGTTCATCTCCTGGCTTTTGCTCTTCACCTGGTTTTTGTTCATCTCCTGGTTTTTGTTCATCTCCTGGCDesign primers

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