Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Clostridium perfringens ATCC 13124

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
22722	ATAATTGTAAATATAACTATAAATGTAATTGTGAAT	Design primers
23057	GAAAGACCTGAAAGACCAGAAAAACCT	Design primers
61151	AATATTAATTTTAAGATTAATATT	Design primers
95433	AAAACATAAAGAAAACAAACAGAAAACAAATAG	Design primers
111371	AAAATAACTAAAAACAACTAATAACAACTA	Design primers
134655	GAAATTGAATTTGAAAATGAAAGT	Design primers
170063	GTGACGGAGTTGTGACGTATTTTTGACGGAGTT	Design primers
186629	TTAATTAAAGTAAATAAAAGCTAATTAAAG	Design primers
191371	TATTCATCAAATATACATCATATATTCAATAAA	Design primers
229891	AATTTAATCTAATATAATTAAATTA	Design primers
231048	AATATAGTATAAAATAATACAATAT	Design primers
237584	GAATTAATAGAATAATTGTAAAGAATAGAATAATTGGAAAGAATAGAATAAGTG	Design primers
237647	AAGATGTGGAAATTTGAAGAAGTAGAAAATTGAAGAAGTAGAAAATTG	Design primers
315926	TATAATTTATATTTTTAATTTATACTTTGAATTTATATT	Design primers
316789	TTTTTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA-GAAGTTA	Design primers
350168	AAATATGAATATAAATGTTAATAT	Design primers
435855	GGAGAAGATGGAGAGGATGGAGAATAT	Design primers
470172	ATAATATATTAAAATATAAGATTAT	Design primers
470413	AAAAAATAAAAAATAAATAAAAAAT	Design primers
501046	AAAATAAATTAATATATATTATAATAACTT	Design primers
502799	ATAAGAGAAAATAAAAGATAAATAGAGAAAATAATATAAA	Design primers
531358	TATATATAGAATATATACAGTATATACACAGAA	Design primers
578437	TTGAACTTGAAATGGAACTTGAAA	Design primers
607816	AAAGAAAACTTAAAGAAAAACTTAAAAGAAATGTTA	Design primers
623507	AATAGAAAAAATAGAGAAAATAGAAGA	Design primers
675967	CAACCAAAAACAATCAAAATCAATAAAAAACATTCAAAAA	Design primers
678770	TATAAGTAGTTTTAAGTAATTATAAGTTTT	Design primers
689220	TAAAATATAAAACACAAAATATTAAATA	Design primers
697749	AATAAAATATATTAAAATTAATTAA	Design primers
705748	ATTAT-ATTAT-ATCAT-AATAT-TTTAT	Design primers
769540	TTATATTCAAATATATTAAATTATAATTAA	Design primers
780652	TACTAATACAAATGCTAATATTAA	Design primers
815847	TATAAGATATTATTTTTAAGATATTATTTTTAAGATGTTATT	Design primers
835329	ATAAATTAAAATAGATTAGAGAAAATTAAA	Design primers
842840	AGATAAAAATAAGGATAAAGATGA	Design primers
845951	AGAATATATAAAATAATATAAAAAATAAAATATAAA	Design primers
853108	ATATAATAATAAATAAGAATAAATGATAAT	Design primers
974425	AATAAAAATAATATTAAAAATAAG	Design primers
986749	TATATTATTTTATAAAATATTATAA	Design primers
993332	ATATTAAATTA-ATATTAAATTA-GTATTAACTTA-ATGTTAACTTA	Design primers
1036426	TTATATTATGTCATATTAGACTATA	Design primers
1089342	TTATAGTTTTATATTTTAATAGTT	Design primers
1096734	TGAAAAAACCATAAAAAAACCACAAAAAAACCA	Design primers
1096843	AATGAAAAGAATGAGAAGAATGAAAAA	Design primers
1097185	AA-AA-GA-AA-AA-TA-GA-AA-GA-AA-TA-GA	Design primers
1139244	TAATAATTAATAGTAGTTAATAATATTTAC	Design primers
1151990	TT-TT-TA-TG-TT-TT-TT-AT-TT-TG-TT-TA-TG-T	Design primers
1163375	AGG-AGG-AGG-CGG-TGG-AGG-AGG-TGG	Design primers
1184893	AAGGCATCTAAA-AAGGCATCTAAA-AAGACATTTAAA	Design primers
1185307	TAAAAATGATAATAATGATAAAAAGGA	Design primers
1201687	GAGATTATATGAGAATAAATGAGATTATAA	Design primers
1245433	TTAATTTTATATAATTTTATTTAAA	Design primers
1286406	AAGAAAATAAAAGTAATGAAGAGAA	Design primers
1333941	TTTTTATAGTTTATTTTAGTTGTTTTTAGT	Design primers
1363757	TTAGATGAATTAATAGAAGAATTATTAGAAGAATAA	Design primers
1367634	CCTTGAGGACCTTGAGGGCCTTGTGGA	Design primers
1379170	AGGATTAGGGTTAGGATTAGCATT	Design primers
1385800	ATTAAAAAAATTAATAAAATTAAAAAA	Design primers
1408018	TAAAATTATCAAAATTATTTAAATTAT	Design primers
1411673	TCCTCCACCACCGCCGCCACCGCCACCACCGCCACCTCCGCCACCACCGCCGGC	Design primers
1411907	AATTTAATATAATGTAATTAAATTT	Design primers
1426392	AATTTGAATTTAACTTTGAATTTT	Design primers
1435547	GAATAAACATGAATATAGATGAATTAACAA	Design primers
1487719	AAAAGAATAAATAAAAAAATATATAAAATAATAAAT	Design primers
1514482	AAAAGGATTTTAAAAAGAATTTAAATAAGGATTTTA	Design primers
1527862	ATTTCTTAAGTATTATTTATTGAGTATTATTTATTGAGTATT	Design primers
1540900	TCTTTAAAATCTTTAGAATCTTTAAAG	Design primers
1564639	TTATTAATAATTATTATAAATTATTATTAC	Design primers
1568156	TTTTTTATTTTTATTTTTATTTTTTTTATT	Design primers
1574244	AATATTTTATTAATATTTAGTTAATAATTTATT	Design primers
1622759	ATTTTTCTATTTTTTTCTATATTTTATTAT	Design primers
1622947	ACAGCA-ACAGCA-ACTGCA-ACAGTA	Design primers
1650967	ATTTTATTTATTATTATTTAATTTTATTCC	Design primers
1658792	TTTATTTTCTTTTAATTTCTTTTCT	Design primers
1659194	AAAATCCGTCACAAGTCCGTCACAACTCCGTCA	Design primers
1766001	TT-TT-TT-AT-TT-TA-TT-TT-TT-CT-TT-CT-T	Design primers
1810645	TTTTGAATATAATATTAAATATAATATTAAATATAA	Design primers
1816401	GTAATAATACTA-GTAATAATACTA-GTAATACTAATA	Design primers
1816484	ACT-AAT-AAT-AAT-AAT-AAT-AAT-AAT	Design primers
1847247	TTTTATTTATATTTTTAAATTTAT	Design primers
1855853	ACCACAGTTATTTCCGAATCCTCCGCAGTTATTTCCAAAGCCACCACAATTGTTTCCAAATCC	Design primers
1860916	TTTCTTTTTCATTTTCTTTTTCTA	Design primers
1871285	ATATTATATCACATTTTATTTTATTATTTT	Design primers
1927312	ATTTTTTTATTTTCTTATTATTTT	Design primers
1997380	AATTTTTAAATTTTAATCTTTCATTTTT	Design primers
2049992	TATATATTAAATATATTATATATGTTA	Design primers
2137641	AAATATATAAAAATATAAATATAG	Design primers
2146486	ATTATATC-ATTATATC-ATTATTTC	Design primers
2350194	TT-TT-TT-TT-AT-TT-TT-TT-AT-CT-TT-TT	Design primers
2393144	TTAAATTAATTAAAATTTAATTACA	Design primers
2394985	TTTTTTATTTTTTTCTTCTTTTTCT	Design primers
2421003	ATAGAAAAAGAAAGAGAACTAGAA	Design primers
2435312	TAATATATTATATTATTATATAACA	Design primers
2446507	GGATTTTCTGGATTTTCAGGTTTTTCT	Design primers
2475954	TTA-TTA-TTA-TAA-TTC-TTA-TTA-TTT-TTA-TTA	Design primers
2496580	CCATAT-CCATAT-CCTTAT-GCATAT	Design primers
2512792	TTCTTCCTCCTCTTCCTCTTCTTGCTC	Design primers
2622938	ATTTAT-ATTTAT-ATCTAT-ATTTCT	Design primers
2640359	ATTTTAATTTTCCTTTTAAGTTTA	Design primers
2648378	AAAAAGAATAAGAAATAGAAAAAA	Design primers
2695446	TATTATTATACTATTATATTATTA	Design primers
2708317	AATTTTATTTAAGTTAAATTTATTT	Design primers
2741442	ATTATTATAATTACTATTATTGTTATTATAATTATT	Design primers
2766867	TTTTTGTGTCATTTATATGTCATGTTTATGTCATTTCTATGTCA	Design primers
2795851	TTTCTTTGATTTATTTCCTTGATTTATTCCTTTAATTTA	Design primers
2807777	TCTTCTTTAATTTCATCTTTATTTATTTCATCTTTATTCATTTCA	Design primers
2811862	TTTTCAAATTTTCAACTTTTAAAA	Design primers
2816788	TTAAATTAATAAATTATTAAAATA	Design primers
2844070	TATCATTAGCATTATTATTATCAC	Design primers
2866476	TCT-TTT-GTT-TTC-TCT-TCT-TCT-TTT-T	Design primers
2912431	TTTTAACT-ATTTAACT-ATTTAACT	Design primers
2942687	AATTAAAACTAAATTTAATATTAA	Design primers
3000419	TATTAAATTTTCTTAAATCTTATAAAATTA	Design primers
3010769	TTTTTTCTTTGTTTTATTTTTTATT	Design primers
3028289	TTATAACTTATTTTTCTATACCTTATTTTTTTATACATTACTTTT	Design primers
3101155	TATTAATATAAATATTGATATAAA	Design primers
3103356	TTATCTTTATCCGTATCTTTATCCTTATAT	Design primers
3103617	TCTTTATCCTCTTTATCTTCTGTATCC	Design primers
3141897	AATTTAAA-TATTTAAA-TATTTAAA	Design primers
3159647	TTATACTTTTTATACTTCTTATAGTTT	Design primers
3199139	TCTCCTGGTTTTTGTTCTTCACCTGGCTTTTGCTCTTCACCTGGTTTTTGCTCATCTCCTGGTTTTTGTTCTTCACCTGGCTTTTGCTCT	Design primers
3199238	TTTTGCTCATCTCCTGGCTTTTGTTCTTCACCTGGCTTTTGCTCTTCACCTGGTTTTTGTTCATCTCCTGGTTTTTGTTCATCTCCTGGCTTTTGTTCATCTCCTGGCTTTTGCTCTTCACCTGGTTTTTGTTCATCTCCTGGTTTTTGTTCATCTCCTGGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

22722

ATAATTGTAAATATAACTATAAATGTAATTGTGAAT