Microsatellites /Tandem Repeats database

Genome: Clostridium perfringens ATCC 13124

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
111376AACTAAAAACAACTAATAACAACTAACAACDesign primers
315928TAATTTATATTTTTAATTTATACTTTGAATTTATATTTTDesign primers
316791TTTTAGA-AGTTAGA-AGTTAGA-AGTTAGA-AGTTAGA-AGTTAGA-AGTTAGA-AGTTAGA-AGTTAGADesign primers
815849TAAGATATTATTTT-TAAGATATTATTTT-TAAGATGTTATTTTDesign primers
853110ATAATAATAAATAAGAATAAATGATAATAADesign primers
993333TATTAAATTAATATTAAATTAGTATTAACTTAADesign primers
1096736AAAAAACCATAAAAAAACCACAAAAAAACCATADesign primers
1659195AAATCCGTCACAAGTCCGTCACAACTCCGTCACDesign primers
1810650AATATAATATTA-AATATAATATTA-AATATAAAATTADesign primers
1816384TACTACTAATAATACTAGTAATAATACTAGTAATAADesign primers
1816486TAA-TAA-TAA-TAA-TAA-TAA-TAA-TAADesign primers
2912432TTTAACTA-TTTAACTA-TTTAACTADesign primers
3141898ATTTAAAT-ATTTAAAT-ATTTAAATDesign primers
3199286CCTGGTTTTTGTTCATCT-CCTGGTTTTTGTTCATCT-CCTGGCTTTTGTTCATCTDesign primers

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