Microsatellites /Tandem Repeats database

Genome: Francisella tularensis subsp. tularensis FSC 198

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
4005ACATTTCTACAAATAT-CTTTTTCTACAAATAT-CTTTTTCTACAAATAT-CTTTTTCTACAAATATDesign primers
8261CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers
66491AAAGCAAGAGCAAGAGCAAAAGAADesign primers
154507CTGCTGCTGCAGCTGTTGCTGTTGCTGCTGDesign primers
176938AAAATAAAAGTAAGTAAAAGTAAGTAAAAGDesign primers
203810TGT-CGG-TGT-TGG-TGG-CGG-TGG-CGGDesign primers
211925AATCAAATCTAATGAAGTCAAATAADesign primers
308611ACAACAAAG-ACAATAAAG-ACAATAAAG-ACAATAAAGDesign primers
308648CAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGA-TAATAAGGADesign primers
334073TTTTCTTTGCTTTTCTTTGCTTTTTDesign primers
541219AACTTTATATAAGTTTTATATAAGTTTTATATADesign primers
612791ATAATGCTATGTAATGATATATAATGTTACDesign primers
735963AGATGATCAAAACAATGATCAAAATAATGATCAAAADesign primers
747078ATATTTTTTATATTATTTATATTTTTTDesign primers
763557TTTATTAA-TTTATTAA-TTTTTTAADesign primers
909836TTTAT-TTTAT-TTTAA-TTAAT-GTTATDesign primers
953532CCAAAACCAAAGCCAATATCAAAADesign primers
1099121AAATCAATATAAATATTAATATAAAAATAAATTTAADesign primers
1186861AAT-ATT-AAA-ATT-ATT-ATT-ACT-ATTDesign primers
1283605CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers
1334687TATTATTTTTATTATCATTATTTTDesign primers
1442534TATTTATTGGTGAACTTTCTTGCTCTTTTGGTGAACTTTCTTGCTCTTTTGGTGAACTTTCTTDesign primers
1482926ATCATT-AACATT-AACATT-AACATTDesign primers
1541176TGTTTTAAAATGTATTTAAATATTTTACAADesign primers
1550164CCCAAAGATATCTCCAAAGTTATCCCCAGAGTTATCDesign primers
1649481ACATTTCTACAAATAT-CTTTTTCTACAAATAT-CTTTTTCTACAAATATDesign primers
1702740TA-AA-TA-TA-TA-AC-TA-TA-AA-AA-TA-TADesign primers
1717326TCTTGTTGACTCTTATTGATTCTTCTTTACDesign primers
1820416TACCGCCATTACCACCATCACCGCCATDesign primers
1866108ACCTAAACTTAAACCTGAGCCTAADesign primers
1868558CCGAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTA-GAAAAAGATATTTGTADesign primers
1886677AT-TT-TT-AT-AT-TT-AT-AT-TT-AT-AT-TT-AT-AT-TTDesign primers

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