Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas atlantica T6c

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
53918CGCGTTAT-TGCGTTAT-TGCGTTATDesign primers
267855CACTACAT-CGCTACAT-CGCTACAT-CGCTACATDesign primers
321503ATTTATGCCCTTATTTATGCACTTATTTGTGCCTTTDesign primers
324041TCCGTGC-CATCTGC-CATCTGC-CATCTGC-CATCTGC-CATCTGC-CATCTGC-CATCTGC-CATCTGCDesign primers
343357TTGCATATTGCGTATTGCATATTGCGTADesign primers
344799TGGTCATGATCATCGTCATGGTCADesign primers
402853ATAGCGCAATAAGAGCGAAATAAGAGCGCAACAAGAACGCAATADesign primers
419157TTTCAGC-CTTCAGC-CTTCAGC-CTTCAGCDesign primers
444916GAAAAAGAGCGTTGCCAAAAAGAGCGTCGCCAAAAAGAGCGCCGCDesign primers
619027GTTAATTAATTGTTAATAAGTTGTTACTTATTTDesign primers
681773CTG-CTG-CTG-TTG-CTG-CCG-CTG-CTC-CTG-CTGDesign primers
698752ACGCTACCCGGTAGA-GTACTACCCGGTAGA-GTACTACCCGGTAGA-GTACTACCCGGTAGADesign primers
732045ATCGCTAGTAATTGTTAGTAATCGCTATTADesign primers
740724CCCTTCAT-CCCTTCAT-CCCTTCATDesign primers
761543TTTATTGGATTTCATTGAATTTCATTGGATDesign primers
774534ATAGCGAATTATAGCTAAATATAGCTAATTDesign primers
929065CATGCGCCCGTATCTTATGCGGCCGTAACTTATGCGCCCGTAACCDesign primers
987284CTCACAAACCAAA-GTCACAAACCAAA-GTCACAACCCAAA-GTCACAAACTAAADesign primers
992066TTCTTAA-CTCTTAA-CTCTTAA-CTCTTAADesign primers
1018484CTAAGGTAACTAAAGTAACTAAGGTAADesign primers
1075297AGTTGC-AAAAGC-AAAAGC-AAAAGC-AAAAGC-AAAAGC-AAAAGC-AAAAGC-AAAAGCDesign primers
1082558TATTTTAATTTG-CACTTTAATTTG-CACTTTAATTTG-CACTTTAATTTGDesign primers
1087810CTTCCA-CTTCCA-CTTCTA-CTTTCADesign primers
1095563AAAAAAACAACTGAACAAAAACAACTGAACAAGAACAACTGADesign primers
1128818CTATCACTCTTATTAGTTAACATTCTTATTAGTTAACATTCTTATTAGDesign primers
1128867TGACACACTTATTAGTTAACACACTTATTAGTTAACACACTTATTAGTTGACACCTTTATTAGTDesign primers
1152083TTAATCAGTGTTTTAATCAGTATTCTAATAAGTGTTDesign primers
1278688CTAACACCTAATACCTAACACCTAGCACDesign primers
1320321TGCAGGGATAGTGAAGGAATAGTGCAGGGATAGDesign primers
1341246TGCTAAAACCTAAAACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGDesign primers
1396327GAGCCAAAGCCAGAGTCAAAGCCADesign primers
1418545ATTGT-ATTGT-TTTGT-ACTGT-ATTATDesign primers
1688959AGCAACTATTACAACAACTATGACAACAACTATGACDesign primers
1693968GAACAGTCAGTAAAGAACAGTCAGTATCGAACTGTCAGCAAADesign primers
1711141AAGCAGCGAGAAAAGCAGTGAAAAAAGCAACGAAAADesign primers
1718357TGTTTGTTTCATTGTTTTTTTCATCGCTTGTTTCATDesign primers
1729473TTAGCAACAACACGTAGCAACATCACGTTGCAACAACACDesign primers
1738579TTCAGGCGCTGCTTCTGGTGCTGCTTCAGGTGCTGCDesign primers
1770155ATCACCTTGCTCACCTTGAGCACCTTGDesign primers
1773176GCACTGCGCTAA-TAACTGCGCTAA-TAACTGCGCTAA-TAACTGCGCTAADesign primers
1774427TGAGGCAATGAGGCGATGATGCAADesign primers
1776694GAAAGACAGAAAGCCAGAATGACAGAAAGCCADesign primers
1793483AATTAACG-TATTAACG-TATTAACGDesign primers
1793946TTACCA-ATACCA-ATACCA-ATACCADesign primers
1807509TTGTTC-TTGTTC-TTGCTC-TTGTTCDesign primers
1841205ACGCCTTGTGGGGCAATACTTTGTGGGGCAATACTTTGTGGGGCADesign primers
2010745TTTTAATACA-ACTTAATACA-ACTTAATACA-ACTTAATACADesign primers
2070838AGTGCCCAGCTCGAAAGTGCTCAGCTCGAAAGTGCCTAGCTGAAADesign primers
2070963GTCATATTCACGCTGTCGTATTCGCGCTGTCGTATTCACGCTDesign primers
2079548GCCTGCA-TGAAGCA-TGAAGCA-TGAAGCA-TGAAGCA-TGAAGCA-TGAAGCA-TGAAGCA-TGAAGCADesign primers
2108782TTCGGCCCAGCATTTACCGGCCCAGCAGTTATCGGCCAAGCAGTTDesign primers
2181413TGACTCTTGTCT-TGACTCTTGTCT-CGACTCTCGTCTDesign primers
2230121AAGAGATCAAGAGCTCAAGAGTTCDesign primers
2259127TTAATAGAGAAGCTAATAGGGAAGTTAATAGCGAAGDesign primers
2335211GTCTAATTTGAAACTCTAATTCGAAACTCTAATTCGAAADesign primers
2370729TCAACAATCACATGAGCAATCACATCAGCAATCAAADesign primers
2380915TGCTTCTGTTTCTCCTTCTGCCTCDesign primers
2395552TTATTGCAA-CTATTGCAA-CTATTGCAADesign primers
2596343TCAAGTAT-TCAGGTAT-TCAGGTAT-TCAGGTATDesign primers
2759494TTATTTTTTTTACATCTTGGTTTTTATTACATCTTAGTTTTTATTACATCTDesign primers
2763819ACCTGA-ACTTGA-ACTTGA-ACTTGADesign primers
2790818CAAGAGTAGGCTCAAGAGTAACCTCGAGAGTAGCCTDesign primers
2818100TCTGACAACTCTGATAACGCTGACAACDesign primers
2818321CAGTGATAATAGTGATAACAGTGACAADesign primers
2818421AACAGCGATAACAGTGATAACAGCGACDesign primers
2835674GTTTTGCCTTAGGTTTTGCTTTTGGCTTTGTCTTAGDesign primers
2916849CTATTGGAACACTCTATTGGCGCACTCTATTGGCGCACTCTATTGGCACTCTDesign primers
2947988ATTTGAAATAACGAATCTGCAATAACGAATTTGAAACAACGADesign primers
2963812TCTGAAGTGCGTAGCGTATGAAAAGTGCGTAGCGTATGAAAAGTGCGTAGCGTADesign primers
2971871TCGCTTTGAACATCACTTTGAGCATCGCTTTTAACADesign primers
3040164GA-TA-AA-AA-TA-AA-CA-TA-AA-CA-TA-AADesign primers
3048769TCGTTCATTGAGGAAGCGTTTATTAAGGAAGCGTTCATTGACGAADesign primers
3092247GAAGAG-AAAGAG-AAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAG-CAAGAGDesign primers
3135005CAAGTA-CAAGTA-CAACTA-CAAGTADesign primers
3162289ACTTTTTTATCAACGACGTTTTTATTAACGACTTTTTTGTCAGTGDesign primers
3171499TTTATGGCGTATTTATGTCGAATTTGTGGCGTADesign primers
3181604CGGCATTCATTTTGATTTGGCATTCACATTGATTCGGCATTCACTTTAATADesign primers
3193813TACAAC-TTCAAC-TTCAAC-TTCAAC-TTCAACDesign primers
3300833CGAGCTCTTTACATCGCCCGGCTCTTTACATCGCCCGGCCCTTTACATCGCDesign primers
3306378AGCGCTGTTTTGGCTAGCGCCTTCTTGGCTGGCGCTCTTTTCGCTDesign primers
3313906GACTTTGT-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGCDesign primers
3321235AAAGCAGTACTTATAAAAGCGGTACTTGTAAAAACGGTTCTTATAAAGGCGGGACTTATADesign primers
3331444AAAGATGGGTGTCTATGTATGTTGGGTGTCTATGTATGTTGGGTGTCTATGDesign primers
3344777GTGATGTTGTGACGTTGTGATGTTDesign primers
3359242AGGCTGTCATTTGGCTCAAGGCTGTTGTTTAGCTCAAGGCTGTCATTTCGCTCADesign primers
3362254GAATCGCT-TATTCTCT-TATTCTCT-TATTCTCT-TATTCTCT-TATTCTCTDesign primers
3365469TGTATTAAGTGGCGTATGAAGTGGCGTATTAAGTGADesign primers
3393975TAGTGGGTCTAAG-TAGTGGGTCTAAG-TAGTGGGGTTAAGDesign primers
3399145CGAAA-CGAAC-CGAAG-GGAAA-GGAAA-AGAAADesign primers
3400114TTATCTACTACTCTTATCCACGACTCTTATTTACTGCTCDesign primers
3407569ATTTTTAGCACCTAGGCAGTTTTTGGCACCTAGGCAGTTTCTCGCACCTAGGCADesign primers
3445835CATGAGTATCGCTAAAACGTGAGTATCGGTAAAACATGATTTTCGGTAAAADesign primers
3500992TATCTTTTTTCTCTCTTCTTTCTATCTTTTTTCDesign primers
3502473TTAAATTTGAATTGAAATTTAATTDesign primers
3610580GGGGCG-GAGGCG-GAGGCG-GAGGCGDesign primers
3754439ACGGAGCTTGATGAGACAGTTCTTGATGAGAAAGAGCTTGATGACDesign primers
3798576GCAACATG-TCAACATG-TCAACATGDesign primers
3799310TTTCGAAATAAGGTCGAAATAAATTCGAAATATDesign primers
3939336TTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCTDesign primers
4012294TAT-AAA-AAT-AAT-GAT-AAA-AAT-AAT-GAT-AAT-AAT-AATDesign primers
4065824AGCAGCTAAATGAACAGCTAAGTGAGCAGCTAAATCDesign primers
4077856AAGAGGCCTCACCGTGCGGTAGAAAGCGCTCACCGTGCGGTAGAAAGCGCTCACCGTGCGGTADesign primers
4092958ATTTATTCTTTTATTCATTTATTADesign primers
4155885GGCTGCTTTTAAGCTTAGGGCGACTTATAAGCTTAGTGCTGCTTTTAAGCTTAGDesign primers
4179752CAGCGCTACATTTTGGCGCACTACATTTTGGCGCACTACATTTTGDesign primers
4179806ATTTCGGAGTACAG-ATTTTGAAGTACAG-ATTTTGGAGTACAG-ATTTTGGAGTACAG-ATTTTGGAGTACAG-ATTTTGGAGTACAGDesign primers
4248437GCTTCTTTTCAAGTCACTTCTTTTCAGATCGCTTCTTTTCAAATCDesign primers
4258070CATGTGTGCTTCTTCCCACATGAAGGCTTCTTCCCA-CATGAAAGCTTCTTCCCACATGAAGGCTTCTTCCCA-CATGAAAGCTTCTTCCCACATGAAAGCTTCTTCCCA-CATGAAGGCTTCTTCCCACATGAAAGCTTCTTCCCA-CATGAAGGCTTCTTCCCACATGAAAGCTTCTTCCCA-CATGAAGGCTTCTTCCCADesign primers
4286719AAGTCTGGTGTGAAAAGTGTGGTGAGAAAAGTGCGGTGTGAADesign primers
4309399AAAGGGATAAGGGGATAAGGGGATDesign primers
4309424AGTGGATA-AGTGGATA-AGTGGATADesign primers
4328994AGCTAAACACGGTTGTTAAACACGGTTGTTAAACACGGTDesign primers
4336710TTGGACT-TTGGGAT-TTGGGAT-TTGGGAT-TTGGGAT-TTGGGATDesign primers
4351380TCAGT-TCAGT-TGAGT-TCATT-TCAGGDesign primers
4375708GTCAGCACTCTATTAGCCAGCAGTCTATTAGCCAGCACTTGATTAGCCAGCACTTGATTADesign primers
4381626CACTCCTG-CTCTCCTG-CTCTCCTG-CTCTCCTGDesign primers
4405938GGTGTCCGTGATGAGAGTGACCGTGATGAGAGTGTCCATGGTGAGDesign primers
4428698TTGAAGGTAACATTGAAAGCAACATTGAAAATAACADesign primers
4577644AAAAAATATAAATAAATTTAAAAAATTAGADesign primers
4592409ACCTTGTTGAGGTTGATGACCTTTTTGGGGTTGAAGACTCTTTTGAGGTTGATGDesign primers
4594253GCTATATTGAGTGAGTTAAGACTATATTGGGTGCGTTAAGACTTTATTGAGTGCATTAAGDesign primers
4600075CGTCTTTTTGTCTGCTCTCTTTTTGTCTACTCTCTTTTTGTCTACDesign primers
4691713ACAAATA-AGAAATA-AGAAATA-AGAAATADesign primers
4788380GCTCCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCT-GGCTCTDesign primers
5054533TATTGAGTGACCTTATTGAGCGACCTTATTAAATGACCTDesign primers
5056196ACACCAACAGCAAAACCAACAACADesign primers
5134160CCGTCA-TTGTCA-TTGTCA-TTGTCA-TTGTCA-TTGTCADesign primers
5173088AAAGATTTCCTAAGATTTCCATAGATTTTCDesign primers

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