Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas atlantica T6c

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
53919GCGTTATT-GCGTTATT-GCGTTATTDesign primers
267857CTACATCG-CTACATCG-CTACATCGDesign primers
324043CGTGCCA-TCTGCCA-TCTGCCA-TCTGCCA-TCTGCCA-TCTGCCA-TCTGCCA-TCTGCCA-TCTGCCADesign primers
402855AGCGCAATAAGAGCGAAATAAGAGCGCAACAAGAACGCAATAAGDesign primers
419158TTCAGCC-TTCAGCC-TTCAGCC-TTCAGCCDesign primers
698754GCTACCCGGTAGAGT-ACTACCCGGTAGAGT-ACTACCCGGTAGAGT-ACTACCCGGTAGAGTDesign primers
740718CTTCATCC-CTTCATCC-CTTCATCCDesign primers
987285TCACAAACCAAAG-TCACAAACCAAAG-TCACAACCCAAAGDesign primers
992067TCTTAAC-TCTTAAC-TCTTAAC-TCTTAACDesign primers
1075300TGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAA-AGCAAADesign primers
1082559ATTTTAATTTGC-ACTTTAATTTGC-ACTTTAATTTGC-ACTTTAATTTGCDesign primers
1095565AAAAACAACTGAAC-AAAAACAACTGAAC-AAGAACAACTGAACDesign primers
1128858CTTATTAGTTGACACACTTATTAGTTAACACACTTATTAGTTAACACACTTATTAGTTGACACCDesign primers
1341248CTAAAACCTAAAACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGACCTAAGACDesign primers
1729474TAGCAACAACACGTAGCAACATCACGTTGCAACAACACGDesign primers
1773177CACTGCGCTAAT-AACTGCGCTAAT-AACTGCGCTAAT-AACTGCGCTAATDesign primers
1793484ATTAACGT-ATTAACGT-ATTAACGTDesign primers
1793947TACCAA-TACCAA-TACCAA-TACCAADesign primers
1841208CCTTGTGGGGCAATACTTTGTGGGGCAATACTTTGTGGGGCAATADesign primers
2010746TTTAATACAA-CTTAATACAA-CTTAATACAA-CTTAATACAADesign primers
2079550CTGCATG-AAGCATG-AAGCATG-AAGCATG-AAGCATG-AAGCATG-AAGCATG-AAGCATG-AAGCATGDesign primers
2181414GACTCTTGTCTTGACTCTTGTCTCGACTCTCGTCTTDesign primers
2335212TCTAATTTGAAACTCTAATTCGAAACTCTAATTCGAAACDesign primers
2395553TATTGCAAC-TATTGCAAC-TATTGCAACDesign primers
2596347GTATTCAG-GTATTCAG-GTATTCAG-GTATTCAGDesign primers
2916857ACACTCTATTGGC-GCACTCTATTGGC-GCACTCTATTGGCDesign primers
2963815GAAGTGCGTAGCGTATGA-AAAGTGCGTAGCGTATGA-AAAGTGCGTAGCGTATGADesign primers
3092254AAGAGA-AAGAGC-AAGAGC-AAGAGC-AAGAGC-AAGAGCDesign primers
3193815CAACTT-CAACTT-CAACTT-CAACTTDesign primers
3300836GCTCTTTACATCGCCCG-GCTCTTTACATCGCCCG-GCCCTTTACATCGCCCGDesign primers
3313909TTTGTGGA-TTTGCGGA-TTTGCGGA-TTTGCGGA-TTTGCGGA-TTTGCGGADesign primers
3331447GA-TG-GG-TG-TC-TA-TG-TA-TG-TT-GG-GT-GT-CT-AT-GT-AT-GT-TG-GG-TG-TC-TA-TG-TA-TDesign primers
3362257TCGCTTAT-TCTCTTAT-TCTCTTAT-TCTCTTAT-TCTCTTAT-TCTCTTATDesign primers
3939337TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTCDesign primers
4077859AGGCCTCACCGTGCGGTAGAAAGCGCTCACCGTGCGGTAGAAAGCGCTCACCGTGCGGTAGAADesign primers
4179754GCGCTACATTTTGGCGCACTACATTTTGGCGCACTACATTTTGGCDesign primers
4179811GGAGTACAGATTTT-GAAGTACAGATTTT-GGAGTACAGATTTT-GGAGTACAGATTTT-GGAGTACAGATTTT-GGAGTACAGATTTTDesign primers
4258076TGCTTCTTCCCACATGAAGGCTTCTTCCCACATGAA-AGCTTCTTCCCACATGAAGGCTTCTTCCCACATGAA-AGCTTCTTCCCACATGAAAGCTTCTTCCCACATGAA-GGCTTCTTCCCACATGAAAGCTTCTTCCCACATGAA-GGCTTCTTCCCACATGAAAGCTTCTTCCCACATGAADesign primers
4309402GGGATAAG-GGGATAAG-GGGATAAGDesign primers
4328995GCTAAACACGGTTGTTAAACACGGTTGTTAAACACGGTTDesign primers
4336715CTTTGGG-ATTTGGG-ATTTGGG-ATTTGGG-ATTTGGG-ATTTGGGDesign primers
4381628CTCCTGCT-CTCCTGCT-CTCCTGCTDesign primers
4428704GTAACATTGAAAGCAACATTGAAAATAACATTGAAADesign primers
4691715AAATAAG-AAATAAG-AAATAAG-AAATAAGDesign primers
4788383CCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGCDesign primers
5134162GTCATT-GTCATT-GTCATT-GTCATT-GTCATTDesign primers

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