Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas atlantica T6c

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
53919GCGTTATT-GCGTTATT-GCGTTATTDesign primers
267857CTACATCG-CTACATCG-CTACATCGDesign primers
324045TGCCATC-TGCCATC-TGCCATC-TGCCATC-TGCCATC-TGCCATC-TGCCATC-TGCCATC-TGCCATCDesign primers
419158TTCAGCC-TTCAGCC-TTCAGCC-TTCAGCCDesign primers
698755CTACCCGGTAGAGTA-CTACCCGGTAGAGTA-CTACCCGGTAGAGTA-CTACCCGGTAGAGTADesign primers
740718CTTCATCC-CTTCATCC-CTTCATCCDesign primers
992067TCTTAAC-TCTTAAC-TCTTAAC-TCTTAACDesign primers
1075301GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAA-GCAAAADesign primers
1082561TTTAATTTGCAC-TTTAATTTGCAC-TTTAATTTGCACDesign primers
1341260ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAG-ACCTAAGDesign primers
1773178ACTGCGCTAATA-ACTGCGCTAATA-ACTGCGCTAATA-ACTGCGCTAATADesign primers
1793484ATTAACGT-ATTAACGT-ATTAACGTDesign primers
1793947TACCAA-TACCAA-TACCAA-TACCAADesign primers
1841210TTGTGGGGCAATACT-TTGTGGGGCAATACT-TTGTGGGGCAATACTDesign primers
2010747TTAATACAAC-TTAATACAAC-TTAATACAAC-TTAATACAACDesign primers
2079552GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAA-GCATGAADesign primers
2395553TATTGCAAC-TATTGCAAC-TATTGCAACDesign primers
2596347GTATTCAG-GTATTCAG-GTATTCAG-GTATTCAGDesign primers
2963816AAGTGCGTAGCGTATGAA-AAGTGCGTAGCGTATGAA-AAGTGCGTAGCGTATGAADesign primers
3092260AAGAGC-AAGAGC-AAGAGC-AAGAGC-AAGAGCDesign primers
3193815CAACTT-CAACTT-CAACTT-CAACTTDesign primers
3313914GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGC-GGATTTGCDesign primers
3331449TGGGTGTCTATGTATGT-TGGGTGTCTATGTATGT-TGGGTGTCTATGTATGTDesign primers
3362260CTTATTCT-CTTATTCT-CTTATTCT-CTTATTCT-CTTATTCTDesign primers
3939337TGGCTC-TGGCTC-TGGCTC-TGGCTC-TGGCTCDesign primers
4179827AGTACAGATTTTGG-AGTACAGATTTTGG-AGTACAGATTTTGG-AGTACAGATTTTGGDesign primers
4309402GGGATAAG-GGGATAAG-GGGATAAGDesign primers
4336716TTTGGGA-TTTGGGA-TTTGGGA-TTTGGGA-TTTGGGADesign primers
4381628CTCCTGCT-CTCCTGCT-CTCCTGCTDesign primers
4691715AAATAAG-AAATAAG-AAATAAG-AAATAAGDesign primers
4788384CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCT-CTGGCTDesign primers
5134162GTCATT-GTCATT-GTCATT-GTCATT-GTCATTDesign primers

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