Microsatellites /Tandem Repeats database

Genome: Burkholderia xenovorans LB400 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9483CGAGGACAT-CGAGGACAT-CGAGGACATDesign primers
115226CCATGACCCAA-CCATGACCCAA-CCACGACCCAADesign primers
115260CACGACCCACC-CACGACCCACC-CACGACCCACC-CACGACCCACC-CACGACCCACC-CACGACCCACC-CACGACCCACCDesign primers
127657CGGCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGC-CACCGCDesign primers
165273GTTGGTGTCGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTTGGTGTCGGTDesign primers
204821GCAACCAC-GCAACCAC-GCAACCACDesign primers
216713ACACGGCCA-ACACGGCCA-ACACGGCCA-ACACGGCCADesign primers
216762AGCGGACGC-AGCGGACGC-AGCGGACGC-AGCGGACGC-AGCGGACGCDesign primers
216815CAGCCAGCA-CAGCCAGCA-CAGCCAGCA-CAGCCAGCADesign primers
277657AGGCACAGGCGAGGCACAAGCGAGGCACAAGCGDesign primers
282967ACTGGCTGA-ATTGGCTGA-ATTGGCTGA-ATTGGCTGA-ATTGGCTGA-ATTGGCTGADesign primers
283034GCGGAACTG-GCGGAACTG-GCGGAACTGDesign primers
291352CGCCTCA-CGCCTCA-CGCCTCA-CGCCTCADesign primers
291386ACGCCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTC-GCACCTCDesign primers
390854CAAGGCAACCGCGAGGCAACCGCAGGGCAACCGDesign primers
467928CCACGGCACGGC-ACACGGCACGGC-ACACGGCACGGCDesign primers
478929GGTGCGGCCGGCTAGGTGCGGCCGGTTAGGTGCGGCCGGCCADesign primers
487181GGCGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCA-AACGCCADesign primers
530321AACCGACCGACAAGCCGACCGACAAGCCGACCGACADesign primers
610155CTGCTGCTGTTGCTGTTGCTGTTGCTGCTGCTGTAGDesign primers
618588AGCCCGCAACGGC-ACCCCGCAACGGC-ACCCCGCAACGGC-ACCCCGCAACGGC-ACCCCGCAACGGCDesign primers
641832CGCAAACAACAGG-CGCAAACAACAGG-CGCAAACAATAGGDesign primers
711641GGCCATCAAG-GCCCATCAAG-GCCCATCAAG-GCCCATCAAG-GCCCATCAAGDesign primers
869062GGTGTG-GGTGTT-GGTGTT-GGTGTT-GGTGTT-GGTGTTDesign primers
869140GGTGTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTC-GGACTCDesign primers
916592CAACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGC-TTACGGCDesign primers
1143890GGCATT-GGCATT-GGCATT-GGCATTDesign primers
1154612GCGAGTTCAG-GCGAGTTCAG-GCGCGTTCAGDesign primers
1200120CGATTCGCATCGATTCGTATCGATTCGCAGDesign primers
1257345ACGGCC-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCTDesign primers
1287820CGATGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGCDesign primers
1288668CAGCACCCG-CAGCACCCG-CAGCACCCGDesign primers
1361751CGAAGTGAAGCGGCGGTGAAGCGGCAGTGAAGCGGCGGTGAAGCGGCAGTGAAGCGGCGGTGAAGCDesign primers
1473999CGCCAG-CGCCAG-CGCCAG-CGCCAGDesign primers
1478876GCCGAT-GCCGAT-GCCGAC-GCCGAT-GCCGAT-GCCGATDesign primers
1478920CGCCGACAG-CGCCGACAG-CGCCGACAGDesign primers
1478948ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGCDesign primers
1582330CGTCACTCA-CGTCACTCA-CGTCACTCA-CGTCACTCA-CGTCACTCADesign primers
1753333ATGGCAA-ATGGCAA-ATGGCAA-ATGGCAADesign primers
1814746ACCCGGCACCCTT-ACCCGGCACCCTT-AACCGGCACCCTT-AACCGGCACCCTT-AACCGGCACCCTTDesign primers
1814812ACCCGGCGCCCTTA-ACCCGGCGCCCTTA-ACCCGGCACCCTTADesign primers
1819768GTGGCCGTTGAGCAGTGGCCGTCGAGCAGTGGCCGTCGAGCADesign primers
1864207CCGCCGTTA-CCACCGTTA-CCACCGTTA-CCACCGTTA-CCACCGTTA-CCACCGTTA-CCACCGTTA-CCACCGTTADesign primers
1879199CGCCGA-TGCCGA-TGCCGA-TGCCGA-TGCCGA-TGCCGADesign primers
2100931AGACGGATC-AGACGGATC-AGACGGATC-AGACGGATC-AGACGGATCDesign primers
2139004GCGTGACCG-GCGTGACCG-GCGTGACCG-GCGTGACCGDesign primers
2164185GGTGAGCTACTGTGAGCTACGATGAGCTACDesign primers
2171842AGCCGGAACTGA-AGCCGGAACTGA-AGTCGGAACTGA-AGCCGGAACTGA-AGCAGGAACTGADesign primers
2171903GCAGGAACCGAA-GCAGGAACCGAA-GCAGGAACCGAA-GCAGGAACCGAADesign primers
2196054CAGCAGCAA-CAGCAGCAA-CAGCAGCAA-CAGCAGCAADesign primers
2198701CTTGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGG-CTCGGDesign primers
2280650AGCCCGAAGCA-GCCCCGAAGCA-GCCCCGAAGCA-GCCCCGAAGCA-GCCCCGAAGCA-GCCCCGAAGCADesign primers
2328558CGGCAAGCA-CGGCAAGCA-CGGCAAGCADesign primers
2407206ACCGATCGT-ACCGATCGT-ACCGATCGT-ACCGATCGTDesign primers
2468550TGCGTG-TGCGTG-TGCGTG-TGCGTG-TGCGTGDesign primers
2606708CGATTCCAGGCTATTCCAGGCTATTCCAGGDesign primers
2617279CCGATTGCGATC-CCGATTGCGATC-CCGATTTCGATCDesign primers
2656035GCCCTTTTGCTTA-TCCCTTTTGCTTA-TCCCTTTTGCTTA-TCCCTTTTGCTTADesign primers
2692192CAGGCTGTGCCTGGCTGTGCCTGGCTGTGCDesign primers
2737766GTGGTTCGGCTTGTGGTGCGGCTTGTGGTTCGGCTTGTGGTTCGGCTTDesign primers
2741239CTGGCGTTT-ATGGCGTTT-ATGGCGTTT-ATGGCGTTT-ATGGCGTTT-ATGGCGTTTDesign primers
2808931CCCGCGTCGGCACCTGCGTCGGCACCCGCTTCGGCADesign primers
2835301GACGCCGTTGCGTCGCCGTTGCGTCGCCGTTGCDesign primers
2873080ATACCTCGATATATCTCGATATACCTCGACDesign primers
2935115TGTGAGA-TGTGAGA-TGTGAGA-TGTGAGADesign primers
3062662GAGTCGTTC-GAGTCGTTC-GAGTCGTTCDesign primers
3079438TGGATGGCGGCG-CGGATGGCGGCG-CGGATGGCGGCGDesign primers
3082963CCTGAAGCGGC-TCTGAAGCGGC-TCTGAAGCGGC-TCTGAAGCGGCDesign primers
3093620CGCGGATGT-CGCGGATGT-CGCGGATGTDesign primers
3093653TGATGCAGG-TGATGCAGG-TGATGCAGGDesign primers
3093681GATACAGGC-GATACAGGC-GATACAGGCDesign primers
3116653CGCCGTTACGCGCCATTACGCGCCGTTACGDesign primers
3119876GGCTAGCT-GGCTAGCT-GGCTAGCT-GGCTAGCTDesign primers
3142405ATTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCA-GTTGCADesign primers
3162203CTGGTTGCCGCT-GTGGTTGCCGCT-TTGGTTGCCGCT-TTGGTTGCCGCTDesign primers
3179456CAGTTT-CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTCDesign primers
3237058TGGCGGCTTGA-TTGCGGCTTGA-TTGCGGCTTGA-TTGCGGCTTGA-TTGCGGCTTGADesign primers
3237119CTGGTCGTTGC-CTGGTCGTTGC-CTGGTCGCTGC-CTGGTCGCTGC-CTGGTCGTTGCDesign primers
3294853GCCAGGAAAGGCGAGGAAAGGCGAGGAAAGDesign primers
3312886TGTTCGGGCGGATG-GGTTCGGGCGGATG-GGTTCGGGCGGATG-GGTTCGGGCGGATG-GGTTCGGGCGGATG-GGTTCGGGCGGATGDesign primers
3321046GGCCGCACGAGGT-GGCCGCACGAGGT-GGCCGCACGAAGTDesign primers
3327001CGCTGCTTGAGGGTCGTCACTGCTTGAGGGTCGTCACTGCTTGAGGGTCGTDesign primers
3346494GCGTCGATG-GCGTCGATG-GCGTCGATGDesign primers
3466330GGCGTT-GGCGTT-GGCGTT-GGCGTT-GGCGTTDesign primers
3474856GGCGTG-GGCGTG-GGCGTG-GGCGTGDesign primers
3474901GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
3495061CGGGTTCGCCG-CGGGTTCGTCG-CGGGTTCGTCG-CGGGTTCGTCGDesign primers
3500726CGCGTTGA-CGCATTGA-CGCATTGA-CGCATTGA-CGCATTGA-CGCATTGADesign primers
3500775GCGTTGAG-GCGTTGAG-GCGTTGAG-GCGTTGAGDesign primers
3500808CGTTGAAG-CGTTGAAG-CGTTGAAG-CGTTGAAG-CGTTGAAGDesign primers
3510785GCTTCAACCGGCTTCAACCCGCTTCAATCGDesign primers
3522002GTGTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGG-GGCTGTGGDesign primers
3522106GCGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGC-GGGGCTGGCDesign primers
3632511GCTGCGCGCCAGCTTGCTGTGCGCCAGCTTGCTGTGCGCCAGCTTDesign primers
3684421TCGTCC-TCGTCC-TCGTCC-TCGTCCDesign primers
3731429GGTGTGAAGCGGC-GGTGTGAAGCGGC-GGTGTGAAGCAGCDesign primers
3751113GCCGGGCGG-GCCGGGCGG-GCCGGGCGG-GCCGGGCGGDesign primers
3912498GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
4011945GGCGGCGGGAGCAGC-GGCGGCGGGAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGC-GGCGGCGGAAGCAGCDesign primers
4012081GTGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GCGGCGGAAGCAGCG-GTGGCGGAAGCAGCGDesign primers
4023260TCCGGCGTGCTC-ACCGGCGTGCTC-ACCGGCGTGCTCDesign primers
4111973TGCCTCACT-TGCCTCACT-TGCCTCACT-TGCCTCACTDesign primers
4186754GCGACGGCAACCC-GCGACGGCAACCC-GCGACGCCAACCCDesign primers
4272831GTCAAGGAC-GTCAAGGAC-GTCAAGGACDesign primers
4574196CCGCCTCAAACCAGCCTCAAACCAGCCTCAAACDesign primers
4707020GCTCGG-TCTCGG-TCTCGG-TCTCGG-TCTCGG-TCTCGG-TCTCGG-TCTCGGDesign primers
4874115CGTTGC-CGTTGC-CGTTGC-CGTTGCDesign primers

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