Microsatellites /Tandem Repeats database

Genome: Burkholderia xenovorans LB400 chromosome 1

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
9483CGAGGACAT-CGAGGACAT-CGAGGACATDesign primers
115259CCACGACCCAC-CCACGACCCAC-CCACGACCCAC-CCACGACCCAC-CCACGACCCAC-CCACGACCCAC-CCACGACCCACDesign primers
127660CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCAC-CGCCACDesign primers
165282GGTGTT-GGTGTT-GGTGTT-GGTGTT-GGTGTT-GGTGTT-GGTGTTDesign primers
204821GCAACCAC-GCAACCAC-GCAACCACDesign primers
216713ACACGGCCA-ACACGGCCA-ACACGGCCA-ACACGGCCADesign primers
216762AGCGGACGC-AGCGGACGC-AGCGGACGC-AGCGGACGC-AGCGGACGCDesign primers
216815CAGCCAGCA-CAGCCAGCA-CAGCCAGCA-CAGCCAGCADesign primers
282969TGGCTGAAT-TGGCTGAAT-TGGCTGAAT-TGGCTGAAT-TGGCTGAAT-TGGCTGAAT-TGGCTGAATDesign primers
283034GCGGAACTG-GCGGAACTG-GCGGAACTGDesign primers
291352CGCCTCA-CGCCTCA-CGCCTCA-CGCCTCADesign primers
291389CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCA-CCTCGCADesign primers
467929CACGGCACGGCA-CACGGCACGGCA-CACGGCACGGCADesign primers
487183CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAA-CGCCAAADesign primers
530323CCGACCGACAAG-CCGACCGACAAG-CCGACCGACAAGDesign primers
618590CCCGCAACGGCAC-CCCGCAACGGCAC-CCCGCAACGGCAC-CCCGCAACGGCAC-CCCGCAACGGCACDesign primers
711643CCATCAAGGC-CCATCAAGGC-CCATCAAGGC-CCATCAAGGC-CCATCAAGGCDesign primers
869068GGTGTT-GGTGTT-GGTGTT-GGTGTT-GGTGTTDesign primers
869144TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGAC-TCGGACDesign primers
916594ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTT-ACGGCTTDesign primers
1143890GGCATT-GGCATT-GGCATT-GGCATTDesign primers
1257351ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCT-ACGGCTDesign primers
1287823TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGG-TGCAGGDesign primers
1288668CAGCACCCG-CAGCACCCG-CAGCACCCGDesign primers
1361754AGTGAAGCGGCGGTGAAGCGGC-AGTGAAGCGGCGGTGAAGCGGC-AGTGAAGCGGCGGTGAAGCGGCDesign primers
1473999CGCCAG-CGCCAG-CGCCAG-CGCCAGDesign primers
1478894GCCGAT-GCCGAT-GCCGAT-GCCGATDesign primers
1478920CGCCGACAG-CGCCGACAG-CGCCGACAGDesign primers
1478948ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGC-ACCGACAGCDesign primers
1582330CGTCACTCA-CGTCACTCA-CGTCACTCA-CGTCACTCA-CGTCACTCADesign primers
1753333ATGGCAA-ATGGCAA-ATGGCAA-ATGGCAADesign primers
1814761CCGGCACCCTTAA-CCGGCACCCTTAA-CCGGCACCCTTAA-CCGGCACCCTTAADesign primers
1864210CCGTTACCA-CCGTTACCA-CCGTTACCA-CCGTTACCA-CCGTTACCA-CCGTTACCA-CCGTTACCADesign primers
1879200GCCGAT-GCCGAT-GCCGAT-GCCGAT-GCCGAT-GCCGATDesign primers
2100931AGACGGATC-AGACGGATC-AGACGGATC-AGACGGATC-AGACGGATCDesign primers
2139004GCGTGACCG-GCGTGACCG-GCGTGACCG-GCGTGACCGDesign primers
2171900GAAGCAGGAACC-GAAGCAGGAACC-GAAGCAGGAACC-GAAGCAGGAACCDesign primers
2196054CAGCAGCAA-CAGCAGCAA-CAGCAGCAA-CAGCAGCAADesign primers
2198704GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTC-GGCTCDesign primers
2280652CCCGAAGCAGC-CCCGAAGCAGC-CCCGAAGCAGC-CCCGAAGCAGC-CCCGAAGCAGC-CCCGAAGCAGCDesign primers
2328558CGGCAAGCA-CGGCAAGCA-CGGCAAGCADesign primers
2407206ACCGATCGT-ACCGATCGT-ACCGATCGT-ACCGATCGTDesign primers
2468550TGCGTG-TGCGTG-TGCGTG-TGCGTG-TGCGTGDesign primers
2606710ATTCCAGGCT-ATTCCAGGCT-ATTCCAGGCTDesign primers
2656036CCCTTTTGCTTAT-CCCTTTTGCTTAT-CCCTTTTGCTTAT-CCCTTTTGCTTATDesign primers
2741240TGGCGTTTA-TGGCGTTTA-TGGCGTTTA-TGGCGTTTA-TGGCGTTTA-TGGCGTTTADesign primers
2835303CGCCGTTGCGT-CGCCGTTGCGT-CGCCGTTGCGTDesign primers
2935115TGTGAGA-TGTGAGA-TGTGAGA-TGTGAGADesign primers
3062662GAGTCGTTC-GAGTCGTTC-GAGTCGTTCDesign primers
3082964CTGAAGCGGCT-CTGAAGCGGCT-CTGAAGCGGCT-CTGAAGCGGCTDesign primers
3093620CGCGGATGT-CGCGGATGT-CGCGGATGTDesign primers
3093653TGATGCAGG-TGATGCAGG-TGATGCAGGDesign primers
3093681GATACAGGC-GATACAGGC-GATACAGGCDesign primers
3119876GGCTAGCT-GGCTAGCT-GGCTAGCT-GGCTAGCTDesign primers
3142406TTGCAG-TTGCAG-TTGCAG-TTGCAG-TTGCAG-TTGCAG-TTGCAG-TTGCAGDesign primers
3162216TGGTTGCCGCTT-TGGTTGCCGCTT-TGGTTGCCGCTTDesign primers
3179462CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTC-CAGTTCDesign primers
3237060GCGGCTTGATT-GCGGCTTGATT-GCGGCTTGATT-GCGGCTTGATT-GCGGCTTGATTDesign primers
3294856AGGAAAGGCG-AGGAAAGGCG-AGGAAAGGCGDesign primers
3312887GTTCGGGCGGATGG-GTTCGGGCGGATGG-GTTCGGGCGGATGG-GTTCGGGCGGATGG-GTTCGGGCGGATGG-GTTCGGGCGGATGGDesign primers
3327003CTGCTTGAGGGTCGTCA-CTGCTTGAGGGTCGTCA-CTGCTTGAGGGTCGTCADesign primers
3346494GCGTCGATG-GCGTCGATG-GCGTCGATGDesign primers
3466330GGCGTT-GGCGTT-GGCGTT-GGCGTT-GGCGTTDesign primers
3474856GGCGTG-GGCGTG-GGCGTG-GGCGTGDesign primers
3474901GGCGGT-GGCGGT-GGCGGT-GGCGGTDesign primers
3495070CGCGGGTTCGT-CGCGGGTTCGT-CGCGGGTTCGTDesign primers
3500730TTGACGCA-TTGACGCA-TTGACGCA-TTGACGCA-TTGACGCADesign primers
3500775GCGTTGAG-GCGTTGAG-GCGTTGAG-GCGTTGAGDesign primers
3500808CGTTGAAG-CGTTGAAG-CGTTGAAG-CGTTGAAG-CGTTGAAGDesign primers
3522005TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGC-TGTGGGGCDesign primers
3522108GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGG-GGCTGGCGGDesign primers
3632516GCGCCAGCTTGCTGT-GCGCCAGCTTGCTGT-GCGCCAGCTTGCTGTDesign primers
3684421TCGTCC-TCGTCC-TCGTCC-TCGTCCDesign primers
3751113GCCGGGCGG-GCCGGGCGG-GCCGGGCGG-GCCGGGCGGDesign primers
3912498GGCGTC-GGCGTC-GGCGTC-GGCGTCDesign primers
4011969AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGA-AGCAGCGGCGGCGGADesign primers
4012083GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGC-GGCGGAAGCAGCGGCDesign primers
4023261CCGGCGTGCTCA-CCGGCGTGCTCA-CCGGCGTGCTCADesign primers
4111973TGCCTCACT-TGCCTCACT-TGCCTCACT-TGCCTCACTDesign primers
4272831GTCAAGGAC-GTCAAGGAC-GTCAAGGACDesign primers
4574198GCCTCAAACCA-GCCTCAAACCA-GCCTCAAACCADesign primers
4707021CTCGGT-CTCGGT-CTCGGT-CTCGGT-CTCGGT-CTCGGT-CTCGGT-CTCGGTDesign primers
4874115CGTTGC-CGTTGC-CGTTGC-CGTTGCDesign primers

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