Microsatellites /Tandem Repeats database

Genome: Pelobacter carbinolicus DSM 2380

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
107196GCAGGAGCATGAGCAGAAGCAGAADesign primers
139522TTCAGAAGTTCTTGCGAATATGCAGAAGTCAATGCGAATATGCAGAAGTGCTTGCGAACGDesign primers
233019TTCTCTGCGCTCTCTGCGTACTCTGCGDesign primers
241674CCACCGCAGCGC-AGACCGCAGCGC-AGACCGCAGCGCDesign primers
438856GGTTTGTCC-TGTTTGTCC-TGTTTGTCCDesign primers
448842TGCTGTC-ACTAGTC-ACTAGTC-ACTAGTC-ACTAGTC-ACTAGTC-ACTAGTC-ACTAGTC-ACTAGTCDesign primers
448906CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCC-CTTGTCADesign primers
448970TCCTCAC-TCCTCAC-TCCTCAC-TCCTCAC-TCCTCACDesign primers
527127GGCGGCCAAGCCGGCCAAGCCGGCCAADesign primers
539211ATATGCTCGATATGGTCGCTATGCTCGDesign primers
576176CACCAAC-CACTAAT-CACTAAT-CACTAAT-CACTAAT-CACTAATDesign primers
618845CAGTGAC-TGGTGAC-TGGTGAC-TGGTGAC-TAGTGAC-TAGTGACDesign primers
618930TCACTAATCACCAATCACGAATTACTAADesign primers
713115GGTGATT-GGTGATT-CGTGATT-GGTCATTDesign primers
738863AAGCAGT-GACTGGT-GACTGGT-AGCTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGT-GACTGGTDesign primers
739053ACTGGTAGCTGGTG-ACTGGTAGCTGGTG-ACTGGTAGCTGGTG-ACTGGTAGCTGGTG-ACTGGTAGCTGGTG-ACTGGTAGCTGGTG-ACTGGTAGCTGGTA-GCTGGTAGCTGGTA-GCTGGTAGCTGGTADesign primers
1049223GTGGCC-GTGACC-GTGACC-GTGACCDesign primers
1063826CCCCCCCCTGCTC-GACCCCCCTGCTC-GACCCCCCTGCTC-GACCCCCCTGCTC-GACCCCCCTGCTC-GACCCCCCTGCTCDesign primers
1112179ACGATTC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGACDesign primers
1112369AATCACC-AATCACC-AATCACC-AATCACC-AATCACTDesign primers
1235128CAATCCC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGAC-AAGTGACDesign primers
1304653GTCACTT-GTCACCA-GTCACCA-GTCACCA-GTCACCA-GTCACCADesign primers
1349865GGGGAAA-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACT-GGTCACTDesign primers
1350097GTCACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTG-GACACTGDesign primers
1350189ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATG-ACAAATGDesign primers
1351548TCACTAA-TCACGAA-TAACTAA-TCACCAA-TCACCAA-TCACCAADesign primers
1405320CGCTGCGGAATCGAATGATGCTGCCGAACCGAATGATGCTGCCGAACCGAATGADesign primers
1591690GTCATTGGTCATTAGTTATTGGTCATTGDesign primers
1591719TGACTGG-TGACTGG-TGACTGG-TGACTGG-TGACTGG-TGACTGGDesign primers
1591762GACAAGT-GACAAGT-GACAAGT-GACAAGT-GACAAGT-GACAAGT-GACAAGT-GACAAGT-GACAAGG-GACAAGT-GACAAGT-GACAAGG-GACAAGG-GACAAGG-GACAAGG-GACAAGC-GACAAGCDesign primers
1607960AACACCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGC-GGCAGCGAAACCGGCDesign primers
1608096GCAGCAAAACCGGCG-GCAGCAAAACCGGCG-GCAGCAAAACCGGCG-GCAGCAAAACCGGCG-GCAGCAAAACCGGCG-GCAGCGAAACCGGCG-GCAACAAAACCCGCG-GCAGCGAAACCCGCG-GCAGCGAAACCCGCGDesign primers
1611781CCGAGGT-TCAAGGT-TCAAGGT-TCAAGGT-TCAAGGT-TCAAGGTDesign primers
1611824CAAGGTT-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGA-CAAGTGADesign primers
1711993GCTACGGTTACGGTTACGGCTACGGTTACGGCTACTDesign primers
1777880ACGGCGACGACGACGGAGACGGCTDesign primers
1779422ACGGCGACGACGACGGTGACGGCTDesign primers
2005271ACAAATGACCAATGACAAAGGACAAATGDesign primers
2034830TTTGTCA-CTTGTCA-CTTGTCA-CTTGTCA-CTTGTCADesign primers
2037569AGTGATTGGTGACTAGTGATTGGTAATTAGTGATTGGTGATTDesign primers
2037623AGTCACT-TATCACT-TATCACT-TATCACT-TATCACT-TATCACTDesign primers
2072753CGAAGTTATCCGCTGTTATCCGCATTTATCDesign primers
2080845GAAGTTATCCGCCGTTATCCGATGTTATCTDesign primers
2095782ACAAATGACAAAGGACAAGTGACAAAGGDesign primers
2096826ACAAATGACAAGTGACAGATGACAAAGGDesign primers
2114312TACAACCA-AACAACCA-AACAACCADesign primers
2122593GCTGACTTGGGGGGTGACTTGAGGTCTGACTTGGGGDesign primers
2164929CATGGC-CATGGC-CTTGGC-CATGGADesign primers
2372249AAAACCGAGGCC-AAACCTGAGGCC-AAACCTGAGGCC-AAACCTGAGGCCDesign primers
2372298AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AGCCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AACCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AACCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGGAAGCCA-AGCCGAAAGCCADesign primers
2372720ACCAAA-ACCAAA-ACAAAA-ACCGAADesign primers
2411450TTCTCTGTG-GTCTCTGTG-GTCTCTGTG-GTCTCTGTG-GTCTCTGTGDesign primers
2412764GCTTTGCGACTTTGCGGCTTTGCGDesign primers
2438540GCAGCAGCACCAGCAACAGCAGGADesign primers
2450095AGGGAGATAGAGAGATAGTGAGATDesign primers
2456269TCGACCA-ATCACCA-ATCACCA-ATCACCA-ATCACCA-ATCACCA-GTCACCA-ATCACCA-GTCACCADesign primers
2515537CTATCGATATCGCGATCGCTATCGDesign primers
2521826ACCTTGG-TCCTTGG-TCCTTGG-TCCTTGGDesign primers
2521861TCCTTGT-CACTTGT-CACTTGT-CACTTGT-CACTTGT-CACTTGTDesign primers
2603196AGCACAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCAC-CAGTCACDesign primers
2709275GGCAGCTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCT-ACCGGTTCGGCTDesign primers
2709396CCGGTTCGGCTACCGGTTCGACTACCGGTTCGACTACCGGTTCGGCTACCGGTTCAGCGACCGGTTCAGCGACCGGTTCAGCGACCGGTTCAGCGACCGGTTCAGCGACCGGTTCAGCGACCGGTTCGGCGACCGGTTCGGCTACCGGTTCGGCGACCGGTTCAGCGACCGGTTCAGCGACCGGCTCGGCTADesign primers
2764196CTCACCGGTTCTTCC-ACTACCGGTTCTTCC-ACTACCGGTTCTTCC-ACTACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGCTCTTCC-ACCACCGGCTCTTCC-ACCACCGGCTCTTCC-ACCACCGGCTCTTCC-ACCACCGGCTCTTCC-ACCACCGGCTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCC-ACCACCGGTTCTTCCDesign primers
2791696AGTGATT-GGTGATT-GGTGATT-GGTGATTDesign primers
2797416AACTCGG-ACCAGTG-ACCAGTG-ACCAGTG-ACCAGTG-ACCAGTG-ACCAGTG-ACCAGTG-ACCAGTGDesign primers
2858582AAAAAAACTA-GGAAAAACTA-GGAAAAACTADesign primers
2964799TTCTTCGTGATCTTCGTGTCCTTCGTGDesign primers
3056439CCAATCACGAATCACCAGTCACCAATCADesign primers
3064779AGTGATT-GGTGATT-GGTGATT-GGTGATT-GGTGATTDesign primers
3228843CATGCCGCCCATGCCACCCATGCCGCCDesign primers
3228871GGCATACCACCAGGCATGCCACCAGGCATACCGCCGDesign primers
3286113AATCGAAATCGGGATCGAAATCGGDesign primers
3317633GTTTTTATACTTTTTTATAGGATTTTCTACDesign primers
3391670AATGAAACTGAAAATCAAAATAAADesign primers
3428884TTATCAAACTATTTTGTGATTTATCAAACTTTTTTATAAATTATCAAACTTTTTTATCCTDesign primers
3445661ACCAGTC-ACCAGTC-ACCAGTC-ACCAGTC-ACCAGTC-ACCAGTC-ACTAGTCDesign primers
3475885ATCGATATCGGTCTCGATATCGATDesign primers
3626669ACCCCGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGT-CCTTGGTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.