Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas haloplanktis TAC125

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
10891TTGAAGCACCTAGCAGCACCTAGCAGCACCDesign primers
166611TTAATTA-TTCATTA-TTCATTA-TTCATTA-TTCATTADesign primers
313263TTCGCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTA-GAACCTADesign primers
330625TAACATC-CAACATC-CAACATC-CAACATCDesign primers
363056CTT-CTT-CTT-CGT-CTT-CAT-CAT-CTTDesign primers
363433GCTGCAGCGGCAGCTTCAGCTGCGDesign primers
368176AGCAGAGCAAGCTGA-AGCTGAGCGAGCAGA-AGCTGAGCGAGCAGA-AGCTGAGCGAGCAGADesign primers
393323TTTCTGA-TACCTGA-TACCTGA-TACCTGA-TACCTGA-TACCTGADesign primers
401046CAGGTTTTAGGTTTCAGGTGTCAGGTTTDesign primers
410736CAGGTTT-TAGGTAT-CAGGTAT-TAGGTAT-TAGGTAT-TAGGTATDesign primers
432272AAGTGATCGGCATCGATGGTATTGAGTGATCGCGATGGATGGTATTAGGTGATCGGCTTAGATAGTATTDesign primers
436028TCTTGCTTTTTATGTTGCGTTTTATGTTGGTTTTTADesign primers
443163TAGATATT-TAGATATT-TAGATCTTDesign primers
452190TTGAAATGGAAATTCAAAATGAAADesign primers
468678TGCTGAC-ACCTGAC-ACCTGAC-ACCTGAC-ACCTGAC-ACCTGAC-ACCTGAC-ACCTGACDesign primers
676227GAAACCATCAGCAAACTATCAGCAAACTATCAGDesign primers
705002GCTGAC-TCTGAC-TCTGAC-TCTGACDesign primers
715561CA-AA-AA-AA-TA-CA-AA-AA-GA-CA-AA-AA-AA-TA-TADesign primers
796879TTTTTAATTAAGTTTTTAAATTAAGCTTTTAAATTACGTDesign primers
819907TTTGCCT-AGCCCCT-AGCCCCT-AGCCCCT-AGCCCCT-AGCCCCT-AGCCCCT-AGCCCCT-AGCCCCTDesign primers
1024712TTTTTGC-CTAGAGC-CTAGAGC-CTAGAGC-CTAGAGC-CTAGAGC-CTAGAGC-CTAGAGC-CTAGAGCDesign primers
1025682ACCAGTACGACCAGCACGACCTGTACGDesign primers
1055192ACAATAT-TGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTT-AGAACTTDesign primers
1075063TTTAAAAT-ATTAAAAT-ATTAAAATDesign primers
1078907ATTAGTTAAATAGTTAAATAGTTADesign primers
1087083AATGAGTAGT-TATGAGTAGT-TATGAGTAATDesign primers
1161354ACCACAGTAAACCCAAGTAAACCAGAGCAADesign primers
1233377TCCAAATATTTATC-TCCAAATATTTATC-TCCAAATATTAACCDesign primers
1238012TCCGCCTCCTCCTCCTCCACCGCCDesign primers
1240228TTGAATAAAATTGAACACAATTTAATAAAADesign primers
1437097CTTTCTCACTAGATACTACTTCACTAGATACTTCTTCATTAGATADesign primers
1465909AGCAGAAGAAGAAGCAAAAGCAAADesign primers
1618166AGATGGTGC-TGATGGTGC-TGATGGTGCDesign primers
1662090CCCTTTATTTGCCCCGCTATTTGCCCCGCTATTTGCDesign primers
1671431GGCTTAGTTATAGCTTAGTTATTACTTAGTTATDesign primers
1680815TCTTAGGTT-TATTAGGTT-TATTAGGTT-TATTAGGTTDesign primers
1818324TATTTAA-TTCTTAA-TACTTAA-TACTTAA-TACTTAA-TACTTAADesign primers
1820276TTTTATGCTAAAACGCAGTTATTGCTAAAACGCAGTTATTGCTAAAACGCADesign primers
1855469TTATTGATTTTTATTGTGTTTTATTAATTADesign primers
2075989AAAGCG-CAAGCG-CAAGCG-CAAGCGDesign primers
2227236AATTAATTATTTTTTTATTTTTTATTTTTTATTTTTTTATTTTTTDesign primers
2248478CTCGTTTTTACTTATTTTTACTTGGTTTTADesign primers
2428596TATATATATACATATCTATATACADesign primers
2471229TTAGTGCTAGGTGCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCTAGGTTCDesign primers
2734905TTGCGTTATTAG-TTAGGTTATTAG-TTAGGTTATTAG-TTAGGTTATTAG-TTAGGTTATTAGDesign primers
2753530ACTCTAG-GTTCTAG-GCTCTAG-GCTCTAG-GCTCTAG-GCTCTAGDesign primers
2809935TACCACCGT-CACCACCGT-CACCACCGTDesign primers
2915633CCTTTTTAGTTAGAT-ACTTTCTAGTTAGGT-ACTTTCTAGTTAGGT-ACTTTTTAGTTAGGTDesign primers
3003371AATCAAGAACCCAATCGAGAACCCGATCGAGAACCCDesign primers
3079068TAGGTAT-CAGGTAT-CAGGTAT-CAGGTAT-CAGGTATDesign primers
3093445TAAT-AAAT-AAAT-AAAT-AAAT-AAATDesign primers

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