Microsatellites /Tandem Repeats database

Genome: Pseudoalteromonas haloplanktis TAC125

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
166614ATTATTC-ATTATTC-ATTATTC-ATTATTCDesign primers
313267CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAAC-CTAGAACDesign primers
330626AACATCC-AACATCC-AACATCC-AACATCCDesign primers
368189GAAGCTGAGCGAGCA-GAAGCTGAGCGAGCA-GAAGCTGAGCGAGCADesign primers
393326CTGATAC-CTGATAC-CTGATAC-CTGATAC-CTGATAC-CTGATACDesign primers
410751AGGTATT-AGGTATT-AGGTATT-AGGTATTDesign primers
468680CTGACAC-CTGACAC-CTGACAC-CTGACAC-CTGACAC-CTGACAC-CTGACACDesign primers
705003CTGACT-CTGACT-CTGACT-CTGACTDesign primers
819911CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCC-CCTAGCCDesign primers
1024717GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGA-GCCTAGADesign primers
1055200GAACTTA-GAACTTA-GAACTTA-GAACTTA-GAACTTA-GAACTTA-GAACTTA-GAACTTADesign primers
1618167GATGGTGCT-GATGGTGCT-GATGGTGCTDesign primers
1680817TTAGGTTTA-TTAGGTTTA-TTAGGTTTA-TTAGGTTTADesign primers
1818333CTTAATA-CTTAATA-CTTAATA-CTTAATA-CTTAATADesign primers
1820281TGCTAAAACGCAGTTAT-TGCTAAAACGCAGTTAT-TGCTAAAACGCAGTTATDesign primers
2075990AAGCGC-AAGCGC-AAGCGC-AAGCGCDesign primers
2471242CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTT-CTAGGTTDesign primers
2734909GTTATTAGTTAG-GTTATTAGTTAG-GTTATTAGTTAG-GTTATTAGTTAGDesign primers
2753539TCTAGGC-TCTAGGC-TCTAGGC-TCTAGGC-TCTAGGC-TCTAGGCDesign primers
2809936ACCACCGTC-ACCACCGTC-ACCACCGTCDesign primers
3079069AGGTATC-AGGTATC-AGGTATC-AGGTATC-AGGTATCDesign primers
3093446AATA-AATA-AATA-AATA-AATA-AATADesign primers

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