Microsatellites /Tandem Repeats database

Genome: Streptococcus pyogenes MGAS5005

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
133407CTTGTTTTAGCTATTTTTAGCTTGTTTAACDesign primers
264664AATAAAAAAGTACAAAAAAAGTAAAAAAAGAGTDesign primers
299238ATCAAACAAAAATCAAAGAAACAACAAAGAAAADesign primers
327806ATGGCAAATAAAGGCAAGTAATGGCTGATADesign primers
725032ACAGCACCAGCAACAGTAGCAGCADesign primers
782306GAACA-AAACA-AAACA-AAACA-AAACADesign primers
801641GCTGCTGCAGCTGCTGGTGGTGCTDesign primers
807242ATCATTATCATAAACATTATAATTDesign primers
881288TCTTTCTTTTTCTTTCTTCTTATTTCTGTTDesign primers
968906AGTTAAGTGAAGTTAAATTAATTTADesign primers
1083442CTTCATTTTCATCCTCATGTTCATDesign primers
1165633ACTGTCATGCACTGTTATTCACTGTCAATCDesign primers
1171700TTTTACAACTTTGTA-AAATACAACTTTGTA-AAATACAACTTTGTADesign primers
1182313ATCTTCTTC-ATCTTCTTC-ATTTTCTTCDesign primers
1358891TTTTCAAACTTTTCAAAGTTTTCAAGCDesign primers
1373940TGTTT-GTTTT-TGTTT-TGTTT-ATTTT-GTTTTDesign primers
1568312TTC-TTC-ATC-TTC-TTC-ATC-TTC-TTC-GTC-TTCDesign primers
1594369CTTTTTCCACCTTTTCCACTTATTCCADesign primers
1675487TTTTTCTGGTTTAGTTTCTGGTTTTTTATCTGGTGTDesign primers
1681728CCATCTCCAGACCAGTCATCTTCAGGCCAGTCATCTCCAGACCAGTCATCTCCAGACCAGDesign primers

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