Microsatellites /Tandem Repeats database

Genome: Vibrio fischeri ES114

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
55646AAATCCAGATAATCCAGAAAATCCACADesign primers
59158TTCCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGADesign primers
61360TTCCTGA-ATCCTGA-ATCCTGA-ATCCTGADesign primers
136108TCCTGAA-ACCTGAA-ACCTGAA-ACCTGAADesign primers
179206CAACAG-CAACAG-CAGCAG-CAACAC-CTACAGDesign primers
199785TACTCTC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGC-TAGGTGCDesign primers
199870AGGTGCT-AGGTGCT-AGATGCT-AGGTGCTDesign primers
201648TGGTGATGGTGTTAGTGATGTTGADesign primers
208144TAAATTAA-AAAATTAA-AAAATTAA-AAAATTAADesign primers
223407TCTTCCT-GAAACCT-GAAACCT-GAAACCT-GAAACCT-GAAACCT-GAAACCT-GAAACCT-GAAACCTDesign primers
286298CTGATGGCG-GTGATGGCG-GTGATGGCGDesign primers
315150TTCTAGT-CCCTAGT-CCCTAGT-CCCTAGT-CCCTAGT-CCCTAGTDesign primers
338242GTGGTC-ATGGTC-ATGGTC-ATGGTC-ATGGTCDesign primers
504342TGGTTTTTTGTGGTTTTGTTTGTGTTTTTGDesign primers
651909GTAGTCC-CTAGTCC-CTAGTCC-CTAGTCCDesign primers
682111CTTGAAC-CTCGAAC-CTCGAAC-CTCGAACDesign primers
708187TTTAGAC-CCTAGAC-CCTAGAC-CCTAGAC-CCTAGAC-CCTAGACDesign primers
809804ATTCAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGA-CCCTAGADesign primers
852688TTTCCCT-AGTCCCT-AGTCCCT-AGTCCCT-AGTCCCT-AGTCCCTDesign primers
921162TTATTCT-AAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCC-TAGTTCCDesign primers
1024309TGTTAC-AGTTAC-AGTTAC-AGTTACDesign primers
1211947TTTTTTC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCCDesign primers
1287382CATTGGCTA-AATTGGCTA-AATTGGCTADesign primers
1376819TA-TT-TG-TT-TT-TA-AT-TT-GT-TA-TT-GT-TT-TG-TT-TT-TDesign primers
1401759TTTATCTATAATAGGTTATCTATAATCGGTTATCTATCATAGDesign primers
1548895CTCAAAATCAAACTCAACCTCAATDesign primers
1657695TCAATTAG-TCGATTAG-TCGATTAG-TCGATTAG-TCGATTAGDesign primers
1762779AAAAAGATAAAGAAAAACAAAAATDesign primers
1834913AATATTAATACTATTATTAATAGTAATCTTDesign primers
1911408GTC-ATC-TTC-GTC-TTC-TTC-ATC-ATC-TTCDesign primers
1954928AGTAACT-AGAAACT-AGAAACT-AGAAACT-AGAAACTDesign primers
2050827TAGGTTT-CAGGTTT-CAGGTTT-CAGGTTT-CAGGTTTDesign primers
2100252ATATCAGCCA-CAATCAGCCA-CAATCAGCCADesign primers
2127086TTCTAG-TTCTGG-TTCTGG-TTCTGG-TTCTGGDesign primers
2127320CGGTTG-TGGTTG-TGGTTG-TGGTTGDesign primers
2353675CACCACCAACACCACCAACACCAADesign primers
2501530TCTTTATCGTTAACTTTATCTTTADesign primers
2521806GCCAAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGG-TTTCAGGDesign primers
2521984TCTATCG-TCTCTAG-TCTCTAG-TCTCTAG-TCTCTAG-TCTCTAGDesign primers
2605053CTAGGGATCAGAAA-CTAGGGATCAGAAA-CTAGGGACTAGAAADesign primers
2785574ACA-CCA-AGA-CCA-CCA-CCA-ACA-TCADesign primers

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