Microsatellites /Tandem Repeats database

Genome: Vibrio fischeri ES114

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
59159TCCTGAA-ACCTGAA-ACCTGAA-ACCTGAA-ACCTGAA-ACCTGAADesign primers
61361TCCTGAA-TCCTGAA-TCCTGAA-TCCTGAADesign primers
136109CCTGAAA-CCTGAAA-CCTGAAA-CCTGAAADesign primers
199789CTCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGG-TGCTAGGDesign primers
208145AAATTAAA-AAATTAAA-AAATTAAA-AAATTAAADesign primers
223409TTCCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGA-AACCTGADesign primers
286299TGATGGCGG-TGATGGCGG-TGATGGCGGDesign primers
315151TCTAGTC-CCTAGTC-CCTAGTC-CCTAGTC-CCTAGTC-CCTAGTCDesign primers
338243TGGTCA-TGGTCA-TGGTCA-TGGTCA-TGGTCADesign primers
651910TAGTCCC-TAGTCCC-TAGTCCC-TAGTCCCDesign primers
708188TTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACCDesign primers
809806TCAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACC-CTAGACCDesign primers
852689TTCCCTA-GTCCCTA-GTCCCTA-GTCCCTA-GTCCCTA-GTCCCTADesign primers
921165TTCTAAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAG-TTCCTAGDesign primers
1211950TTTCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAG-TCCCTAGDesign primers
1287383ATTGGCTAA-ATTGGCTAA-ATTGGCTAADesign primers
1401760TTATCTATAATAGGTTATCTATAATCGGTTATCTATCATAGGDesign primers
1657698ATTAGTCG-ATTAGTCG-ATTAGTCG-ATTAGTCGDesign primers
1954931AACTAGA-AACTAGA-AACTAGA-AACTAGA-AACTAGADesign primers
2050828AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTC-AGGTTTCDesign primers
2127091GTTCTG-GTTCTG-GTTCTG-GTTCTGDesign primers
2521808CAAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTT-TCAGGTTDesign primers
2521990GTCTCTA-GTCTCTA-GTCTCTA-GTCTCTA-GTCTCTADesign primers

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