Microsatellites /Tandem Repeats database

Genome: Thermococcus kodakaraensis KOD1

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
80626ATCCCCAAATCCTCAAGTCCCCAADesign primers
114669GGTGATGGCGATGGTGAAGGTGAAGDesign primers
160675GCTTCAGCGGCTTAAGCGGCTTCAGCADesign primers
421314GCTCGAGCTCAAGCTCGGGCTCGGGDesign primers
763481ACGCAAGAAGACGGAAGAAGAGGCCAGAAGADesign primers
879135GAA-GAA-GAC-TGG-GAT-GAG-GAC-TGG-GAA-GAA-GAC-GAG-GADesign primers
1004381CTTCAACTTCGAGTTCAAGTTCAACDesign primers
1082055CAAAACCAGAACCAACACCAAAAADesign primers
1192641CCTGGGGATTCTTGGTGATTTCGGGGGATTCDesign primers
1241577CCT-CCT-CCT-CTT-CTT-CCT-CTT-CCT-CCT-CCTDesign primers
1241968CTTCCTCCTCTTCCTCTTCTTCCTCCGCDesign primers
1494654ATTTCCGTTTCCATTGCCGTTTCCDesign primers
1549944AA-AA-GA-GC-AA-AG-AG-AA-AA-GA-AA-AADesign primers

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