Microsatellites /Tandem Repeats database

Genome: Streptococcus thermophilus LMG 18311

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
122526AGAAGAAGAAGTAAAAGAAGAGGAAGDesign primers
144870TGTTTGAAAAGGGTGTACACT-TTAATGAAAAGGGTGTACACT-TTAATGAAAAGGGTGTATACT-TDesign primers
322884AAGTTCCGCCACCATTTCCGCCACCATTTCCGCCACDesign primers
422401AGCAACATCAGAAGCTGCATCAGAAGCTGCATCAGAAGDesign primers
652515CAATAACAACAATAATAACGATAADesign primers
653151TTCAAGTTCATC-ATCAAGTTCATC-ATCAAGTTCTTCDesign primers
693018AT-AA-AG-AT-AA-AA-AG-AA-AG-AT-AA-AADesign primers
770728AAGTTGAATTTGATGTTGAAGTAGDesign primers
774351ATTCATCATATCATGCAT-ATTGTCCATATCATGCAT-ATTGTCCATATCATGCAT-ATTGTCCATATCATGCAT-ATTATCCATATCATGCAT-ATDesign primers
774465CATATTGTGCATGTTGTGCATATTGTCCATATDesign primers
834861TTATGAAAGATTATGGAAAATTATTTAAGADesign primers
982351CAAAAAAAAAAAAAAACAAAAAACDesign primers
1121157TTAAAAAAACTTAAAAAGCCTTCAAAACACDesign primers
1234702GCCTTTTTGCCATTTTGCCTTTATDesign primers
1360374CATTTTAACTCCTATTAACTCCTATTAACTCDesign primers
1622907TA-TT-TT-TT-TA-TA-TT-TA-TT-TT-TA-TT-TC-TA-TA-TDesign primers

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