Microsatellites /Tandem Repeats database

Genome: Parachlamydia sp. UWE25

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
140366AATTAAATTCACTTATATTAATTTAADesign primers
227217TT-TT-TT-TC-TT-TC-TT-TT-TT-TG-TT-TT-TDesign primers
443177ATAAATTGAAAGAAAAATTGAACGATAAACTAAAAGADesign primers
473005ATTAATTTTATTTATTTTTAATAAATTTTADesign primers
522526TTTTAAAAATTTTTATGAATTTTTTAAAAGDesign primers
580859AATTTTTTTTATTTTTTTATGGTTTTTTTTDesign primers
637898AGCAATAAAACAATAAAGCAATATAGDesign primers
737534CTGCTGCTGGTGCTCCTGCTGCTGCDesign primers
746586TTTTTTATTTTTTTTTTGTCTTTTTDesign primers
860845AGCAATT-AGCAGTA-AGCAGTA-AGCAGTA-AGCAGTA-AGCAGTA-AGCAGTA-AGCAGTA-ADesign primers
866012TTTTAATATTTTATTATTCTAATADesign primers
928789TAATT-TAATT-TTATT-TAAAT-TAACT-TATTT-TDesign primers
1117487TGATAAAGAATGACAAGGAATGTTAAACAADesign primers
1181202TCTCTGCCTTATGCTCTTGCCTCTCTACTTTATACTCCTGCCTCTCTACTTTATGCTTTTGCATDesign primers
1203677ATTAATTAAATAATTAATTAATAAADesign primers
1203779TAAATTTAAATAGAAATTTAAATCTADesign primers
1253395AAAAATAACATAAAATAAAAAAAATTCACAAADesign primers
1298763TCATTCTCACTCTCATTCCCATTCDesign primers
1307771TTTTATTTTTTTTAATTTTCTTTTGTDesign primers
1329936AAATTTAAAATTAAAGTTAAATATDesign primers
1433198TTTTAAAAAGATTTTAAACAGGTTCTAAGAAGADesign primers
1497691TTAATTAATT-TTAATTAATT-ATAATTAAAT-TDesign primers
1635810TTCAATTTCTAATTCAACTTTTAAATCATTTTCTAADesign primers
1677579TGAAGACGAAGATGAAGACGAAGATDesign primers
1687803TATTCGAG-TATTCGAG-TATGCGAG-TDesign primers
1695188AAATAAACTATAATATAATAAAATAAADesign primers
1738089ATTTGGATTTAGGTTTGGATTTCGDesign primers
1842940TATACTTTTAAATATTTTTATTTACTTTTGDesign primers
1851092TTTTGCTTTTGGCTTTGCTTTTACDesign primers
1874402AAGTTTTATTAAAGTTTATTAAGTCTTATCDesign primers
1878296AAGTTTTATTAAAGTTTATTAAGTCTTATGDesign primers
1891356TCGTCATCATCATCATCATCGTCTTCGTCATCDesign primers
1891406GTC-CTC-GTC-ATC-ATC-GTC-ATC-ATC-GTC-GTC-ATC-GTC-TTC-GTC-ATC-ATC-GTC-ATC-GTC-ATC-GTC-TTC-GTC-ATC-GTCDesign primers
1934348ATTTGGATTTAGGTTTGGATTTAGDesign primers
2061226CCTAGACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACC-AATCAACCDesign primers
2069153AAAAAAAGAAACAAATAAAAAAAATDesign primers
2125584ATTAACAAATAATTAATAAATGCTTAATAAATAADesign primers
2135088ATCATCACAGTC-AGAATCACAGTC-AGAATCACAGTC-ADesign primers
2144101TTAATTAGATTTTATTATATTTAATTATTTDesign primers
2229612ATA-AAA-ATA-AAT-AAA-TGT-AAA-AAA-TAA-TAADesign primers
2239425AAAAATATATAAAAATAAAAAAAGATGTATDesign primers
2367295AGGAGGAGGGGGAGGAGCGGGAGGDesign primers
2410762TCTCCTTTAAGAATTTCTTCATTGAGAATTTCTTTTTTAAGAGTTTDesign primers

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