Microsatellites /Tandem Repeats database

Genome: Lactobacillus johnsonii NCC 533

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
133340TTTTTGTTTCTTTTGGTATCTTTTTATTTADesign primers
166459GCACAAGCACAGGCAAAAGCACCADesign primers
329645ACT-ACA-ACT-AAA-ACA-ACA-ACT-ACA-ADesign primers
463178TTCAGCTGCTGCTCCAGTTGCTGCTGCAGGTGCTGCDesign primers
552149AAAATAAAAATTAAACTAAAAAAAADesign primers
593783AAAGTATAAA-ATAGTATAAA-ATAGTATGAA-AADesign primers
866392TTTTAATTGTAATTTTATATTTAATTDesign primers
923115ATGGCT-ATGGCT-ATGGTT-ATGGCT-ADesign primers
965237TTTATCTTTATTTTTGTCCTTATCTTTDesign primers
990369CAGAACCAGAAGCAGAGCCAGAAGDesign primers
1187245TA-TT-TT-TA-TC-TT-TA-TT-TG-TA-TT-TTDesign primers
1239444AACAGGCTTAGTTGGAGTAACTGGTTTAGATGGAGTTACTGGCTTAGCTGGAGTAACDesign primers
1284372TTTTTTTAATTTTTTATTTTCTTATDesign primers
1284958TTCTTCTAATTCTTCTGATTCTTCTAATDesign primers
1320230CCTAACCTATCCTTACCTAACCTATDesign primers
1325124AA-AA-TA-TA-AA-AT-TA-TA-AA-AA-TA-TA-AADesign primers
1389441TAACTTCTTCAG-TTTCTTCTTCAG-TTTCTTCTTCAG-TDesign primers
1678458ATTTTAATTTTTTTTACTTTATTTCTTTTTDesign primers
1724975TGCAACCTACTAAGCCTGTTCAGCCTACCAAGCCTGTGCAACCTACCAAACCGGTDesign primers
1725137TTCAACCTACCAAACCGGTTCAACCTACTAAACCAATTGAACCTACTAAGCCGGTGAAACCTACCAAACCGGTDesign primers
1725212AGCCTACTAAACCGGTTAAACCTACTAAGCCGGTGAAACCTACCAAACCGGTTGADesign primers
1725554GGCCTACTAAGCCGGTCGAGCCTACTAAACCGGTCAAACCTACTAAACCGGTCGDesign primers
1850064TCTTTTT-ACTTTTT-ACTTTTT-TCTDesign primers
1903837TTTTTCTTTGTATTGCTTTGTTTATCTTTATDesign primers
1979845TTCTTTTTATAATGCTTTTTACAATTGTTTTCATAATTDesign primers

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