Microsatellites /Tandem Repeats database

Genome: Onion yellows phytoplasma

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
3161TAATTTTTGTTATCTTTTGTTACTTTTTCTDesign primers
3458TTTTTTTGATGGTTTATTTTTTGATGGTTTTTGTTCAGATGGTTTDesign primers
10225AAAACCATAACCAAAACAATAACCDesign primers
27340ATTTTTAATTTTTTAAGTTTTTAADesign primers
46458AAAAACAAAAAAAAGAAAAAATAAAAAAATDesign primers
49041AATATTTAAAAATTGTTAAAAATGTTTTAADesign primers
58217AAAAAAACAAATAAAAACACTAAAAATCAADesign primers
80083ATTATTTTATTATTTCAATATTTTDesign primers
98584ATTCAAAAAAGGAATTA-ATACAATTAAGGAATTA-ATACAATTAAGGAATTA-ATACAATTAAGGAATTADesign primers
128648TTTTTTTTGTTTTTTTGTTGTTTTDesign primers
132969TTTTTTTTTTTTTTTGCTTTTTTTDesign primers
133023CGCGCTTTTTCTCACTTTTTCGACCTTTTTDesign primers
156008TTTTTTACTGTTTTTTTCTCTTTTTTGCCGDesign primers
170432ATAAAAAACAATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCA-ATAAAATAATATTCADesign primers
183283GTTTTAATT-GTTTTAATT-CTTTTAATTDesign primers
190880ATTATTTTTTTAAGAACTTGTTTTTTAAGAATTTGTTTTTTAAGGDesign primers
197396ACCAAA-ATCAAA-ATCAAA-ACCAAADesign primers
207965TT-TT-AT-CT-TT-AT-TT-TT-AT-TT-TT-TTDesign primers
215291CATTAACAAAATATTAATAAAACATTAACAAAADesign primers
235575AGTTTTTTTTGGTTTTTTTGATTTGTTTTTDesign primers
239458GATTTATTTT-TGTTTATTTT-TGTTTATTTTDesign primers
242320AATAAATATAAATATAAAAATGAADesign primers
270640TGCAAATAATTACCAATAATTTCAAATAATDesign primers
310915TTTATTTTTTTGTTTTTTTAATTTDesign primers
311209TTAATTTAGAA-ATTATTTAGAA-ATTATTTAGAA-ATTATTTAGAADesign primers
311711TT-TT-TT-TA-TT-TT-TG-TT-TT-GT-TT-TT-TA-TT-TTDesign primers
337927AAAAAAAATAAAAATAATAAAAAAGDesign primers
347236TTTTTTTCTTTTTTATTTTGTTGTTTTTTGDesign primers
347280TTTTAACAATTTTTAGGAATTTTTAGGAATDesign primers
367465TTTTTTTGTTTTTTTAATTTTTTGDesign primers
379620GGAAAAACAAG-AAAAAAACAAG-AAAAAAACAAG-AAAAAAACAAGDesign primers
384555CAAACTGTTATAAAGTTGTTAGTAAAGTGTTATAAAGTTGTTAGTAAAGTGTTATAAAACTGTTAGDesign primers
388398TTTTTTTTCTTTTATTTTTGTTATTDesign primers
397007TTGATTTTTTTGTATTTTTTTTGTTATTTTDesign primers
405770TTGTTTTTCTTTTTGATTTTGGTTDesign primers
408358TTTTTTTGTTTTTTTAATTTTTTGDesign primers
420512GGAAAAACAAG-AAAAAAACAAG-AAAAAAACAAG-AAAAAAACAAGDesign primers
428254AAAAATATTTACTAATATTTAATATTATTTDesign primers
428523TTTATAGAAATTAATATAAATTTTTAAAAADesign primers
431281ACAAAATGTCATAAAAGTGTCAGTGAAGTGTCATAAAAGTGTCAGTGAAGTGTCATAAAAGTGTCADesign primers
437710TTTCTAAATCTATTTGTTCTAAATTTATTTGTTCTAAATTTTTTTDesign primers
440073TTGTTTTTCTTTTTGATTTTGGTTDesign primers
448635AAAAATATTTACTAATATTTAATATTATTTDesign primers
448904TTTATAGAAATTAATATAAATTTTTAAAAADesign primers
467361TTTTTTAAATTCTTTTATATTTTTTTGATTDesign primers
471003TGAAAATGAAAAAGAACAAAATGAAAAAGATCAAAATACAAAAGADesign primers
501475TTATTATCATTATTCTTATTATTTTTATTTDesign primers
506866CAAAACTA-AAAAACTA-AAAAACTADesign primers
514632TAGTAAAAAAAATACTATAAAAAATACTATAAAAAADesign primers
517817AAAAAAAACAAAAATCAAAATAAAADesign primers
533212ATTTGGATTAATAATT-ATTTCAATTTATAATT-ATTTCAATTTATAATT-ATTTCAATTTATAATTDesign primers
537986AGGATTTGAAGGATTTAAAGGATTTGGDesign primers
543217AA-CA-CA-AA-GA-CA-AA-CA-CA-AA-CA-AADesign primers
548896GCTAAAAAATTAGCTAAAAAGTTAAGTAAAAAATTADesign primers
552383AA-AA-AT-AA-AA-AA-AG-AA-AA-AG-AA-AG-ADesign primers
558897GTGGTTTGGTTGTTTGGTGGTTTTDesign primers
570511ATTTAAAGTTTTTTTAAGTTTTTTAAAATTDesign primers
591770TATAAAATTACCATTTTATTACCATTAAGTTACCTTTTTATTACCATTAAGTTACCTTTTTATTACDesign primers
591837ACTTTATTACC-ACTTTATTACC-GTTTTATTACC-ATCTTATTACC-ACTTTATTACC-ACTTTATTACCDesign primers
609146GAAAAACCAGA-AAAAAACAAGA-AAAAAACAAGA-AAAAAACAAGADesign primers
614076CAAACTGTTATAAAGTTGTTAGTAAAGTGTTATAAAGTTGTTAGTAAAGTGTTATAAAACTGTTAGDesign primers
642977AACTAACAACTTTATAACACTTTACTAACAGTTTTATGACACTTTACTAACAGTTTTATAACACTTDesign primers
654848AATAAAATAATAAAAGGATAAAATDesign primers
680074AA-AG-AT-AT-AA-GG-AT-AT-AA-AA-AT-ATDesign primers
697585TAAAAAAATATAAAAATGAAAAAADesign primers
709055AAAAACAAAATCAAAAAAAAAAAAAACAACDesign primers
719825GAAAAAGAAAACGATAAAGAAAAGDesign primers
729065AAATTGTCATAAAAGTGTCAGTGAAGTGTCATAAAAGCGTCAATGAAGTGTCATAAAAGTGTCATTDesign primers
735438TTTCTAAATCTATTTGTTCTAAATTTATTTGTTCTAAATTTTTTTDesign primers
740884TTGTTTTTCTTTTTGATTTTGGTTDesign primers
746275GTTTATTTTTTTAGTGCATTTTTTTAGTGCATTTTTTTADesign primers
753930AAAATAAAACAAATTTAAATAAAACDesign primers
761401ATATTTTATTATAATATTTTATACTDesign primers
766057TATTTTATAAATAAATTATAAATAAATTATAAADesign primers
774752AAATGATGATAAAATGATGAGTGTATGATGATADesign primers
775890AAAAAACAAAAAGAAAAAACTAAAADesign primers
776982CAAAAGTGTTATAAAACTGTTA-GTCAAGTGTTATAAAACTGTTA-GTCAAGTGTTATAAAAATGTTADesign primers
797748GTTTGATTT-GATTGATTT-GATTGATTT-GATTGATTTDesign primers
798026AATTATT-ACTTATT-ACTTATT-ACTTATTDesign primers
798055TTTGTTA-TTTGTTA-TTGGTTA-TTTGTTGDesign primers
811178AATAATAAAATACTAAAATAATATDesign primers
822880AACAAAACAATAAAACAACAAAATDesign primers
826343ATAAATAATTAATAATAAATAACAAATADesign primers
832837ATTAATATTGATGTTAATATTGATDesign primers
839297AAAATGAAATGAAATGACATAACATGAAAADesign primers
846121AAAATTTTTTAAAATCTTTAATCATTTTTTDesign primers
847856CCAAAAAAAGAGCAAAAACAGACAAAAAAAAGTDesign primers
850157TTTTATTATTTTTAACTTT-TTTTATTATTTTTAACTTT-TTTTATTATTTTTGGTTTTDesign primers
850306TTTTATAAAATTTTATAAATGTTTAAAAAADesign primers

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