Microsatellites /Tandem Repeats database

Genome: Onion yellows phytoplasma

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
98591AAAGGAATTAATACAAT-TAAGGAATTAATACAAT-TAAGGAATTAATACAAT-TAAGGAATTAATACAATDesign primers
170441AATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAA-TATTCAATAAAATAADesign primers
239459ATTTATTTTT-GTTTATTTTT-GTTTATTTTTDesign primers
311210TAATTTAGAAA-TTATTTAGAAA-TTATTTAGAAA-TTATTTAGAAADesign primers
379621GAAAAACAAGA-AAAAAACAAGA-AAAAAACAAGA-AAAAAACAAGADesign primers
420513GAAAAACAAGA-AAAAAACAAGA-AAAAAACAAGA-AAAAAACAAGADesign primers
506867AAAACTAA-AAAACTAA-AAAACTAADesign primers
514635TAAAAAAAATACTATAAAAAATACTATAAAAAATACDesign primers
533218ATTAATAATTATTTCAATTTATAATTATTTCAATTTATAATTATTTCADesign primers
570512TTTAAAGTTTTTTTAAGTTTTTTAAAATTTDesign primers
591838CTTTATTACCACTTTATTACCGTTTTATTACCADesign primers
591873TTATTACCACT-TTATTACCACT-TTATTACCATTDesign primers
609147AAAAACCAGAA-AAAAACAAGAA-AAAAACAAGAA-AAAAACAAGAADesign primers
642986CTTTATAACACTTTACTAACAGTTTTATGACACTTTACTAACAGTTTTATAACACTTTACTAACGGDesign primers
766060TTTATAAATAA-ATTATAAATAA-ATTATAAATAADesign primers
776984AAAGTGTTATAAAACTGTTAGT-CAAGTGTTATAAAACTGTTAGT-CAAGTGTTATAAAAATGTTAGTDesign primers
797750TTGATTTGA-TTGATTTGA-TTGATTTGADesign primers

Please help us improve this resource by reporting problems, suggestions etc.