Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Rhodopseudomonas palustris CGA009

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
55055	GCGCCGCCGCGCCGCGCCGCCGCCG	Design primers
174975	GCG-GCG-CCG-GCG-CCG-GCG-CCG-GCG-G	Design primers
176017	TTGTCCTTTTCCTTATCCTTCTCC	Design primers
180573	GAGGCGCAAGCGGGCGCAAGGTGGCGCAGGG	Design primers
219116	TC-GC-GC-TC-GC-CC-GC-GC-GC-TC-GC-GC	Design primers
238915	GCGGCTGACCGGGCTGCGGCGGAACCGGCTGCGGTTGGCCGGGCGGCGG	Design primers
264514	GGCTTCCATGGCGGTGGATTCCGCGGCGGTGGTTTCCGTGGCGGC	Design primers
318234	TGGCGCTGGCGGTTGCGCTGGCGG	Design primers
343265	GCGACC-GCGACC-GCGATC-GCGATC	Design primers
353043	GCAGCAGCCGGCTGCAGTCGGCAACGGCCGG	Design primers
539392	TCGGCCTCGGCTTCCGCCTCGGCCT	Design primers
540031	GCCTTCACCTCGGTCTTGACCTCGGCGTTCACCTCCGCCTTC	Design primers
541773	CGATTGCGATGGCGATTACGATCG	Design primers
549962	CGA-CCA-CCA-CCA-CCA-CCA-CCA-CCA-C	Design primers
607418	GGT-GTT-GGG-GTT-GTT-GTT-GTT-GTT	Design primers
750299	CGTCGGCGGCGGCCTCGGCGTCGC	Design primers
826362	GGAGGTGCTC-TGCGGTGCTC-TGCGGTGCTC-TGCGGTGCTC-TGCGGTGCTC	Design primers
902582	GGTGATGGTGCTGCTGATGCTGAT	Design primers
968016	CGATAACGGTAACGATAACGACAAC	Design primers
970733	ACCATCACCACCACGATCACGATCA	Design primers
986187	TCGACGTCGACCTCGAAGTCGGCG	Design primers
999703	GTC-GTC-GTC-ATC-CTC-GTC-GTC-ATC	Design primers
1128988	GGCGGTGGTGGTGGTGGTGGCGGA	Design primers
1135537	CGGCAAGGCCAAGACCGTCAAGCCCAAGACCGTCAAGCCCAAGGCCG	Design primers
1155859	CAAGCCGGCCGCCAAGCCCGCTGCCAAGCCCGCCGC	Design primers
1155934	GACCAAGGCTGCGGCCAAGCCTGCAACCAAGGCGGC	Design primers
1161298	TCGACCTCGATCTCGATCTTGACC	Design primers
1238133	AAGTCGAAGCCGAAGTCCAAATCGAA	Design primers
1247858	GCCCATGCCGCCCATACCGCCCATGCC	Design primers
1256309	GCGCACCGCAGCGCGCCGCAGCGCCG	Design primers
1273154	TTCGGTGACCGTCCCAAGCGGGATTTCGGCGACCGGCCCAAGCGCGACTTCAGTGATCGCCCCAAGCGCGATTT	Design primers
1394710	GCCGAACCAGGCCGAACGCGGCCAAATCAGG	Design primers
1464042	CGGCGTGGCGCGGCTCAGCGCCGCG	Design primers
1475479	GCGGCGGCTGCGGCGACGGCAGCGGCG	Design primers
1494851	TCGACGTCGACCTCAACGTCGAAG	Design primers
1499089	GCC-GCC-GCC-GCC-ACC-TCC-GCC-GCC-ACC-GCC-GCC-GCC	Design primers
1663061	TGGCGCTGTCGCTGACGCCGGCGCT	Design primers
1807559	AGGCCGAGCCCGAGGGCGAGGACG	Design primers
1842931	AAGAAGGCGACCAAGAAGGCCGCCAAGAAAGCGACGAAGAAGGCAGCCAAGAAG	Design primers
1843015	GCCAAGAAGGCCAAAAAGGCTAAGAAG	Design primers
1864756	AGGCCGAGCCCGAGGGCGAGGACG	Design primers
1876954	GGCGGCGCCGGCGGCGCTGGCGGTGCCGG	Design primers
1988553	GCGCTGGTGCTGGTGCTGGCGCAG	Design primers
1989156	GAAGCTGCAGCCAAGGAAGCGGCTGCGAAGGAAGTTGCCGCCAAGGAAGCTGCGGCTAAGG	Design primers
2015921	GCC-GGC-GCC-GCC-GTC-GGC-GCC-GTC-G	Design primers
2039495	CGGCTTGGCTTGGGCCTGCTTGGCCTTGGCCGGCTTGGCGTGGTGC	Design primers
2070723	GGTC-GGCG-GCTC-GCTC-GGCA-GCTC-GGTC-GGTC-GCTC-G	Design primers
2084015	CGGGCGCGCGCGCTGGCGCAGGCG	Design primers
2089039	CACCGCGCCGCACAGCGCCGCATCG	Design primers
2161471	GGCAGCCGACGCAT-AGCAGCCGACGCAT-AGCCGCCGACGCAT	Design primers
2396459	GCTGGATGATGTTCGGCTGCATGCTGCTCGGCTCGCTGATGATCG	Design primers
2445535	CCAGCAGGCCCAGCAGTCCCAGCAGTCCCAG	Design primers
2640514	CGATCGCGACCGCGATCCTGATCG	Design primers
2744791	GCGTCCAACAGATCGTCCAACAAAACGTCCAACACA	Design primers
2750072	GTG-CCG-GCC-GCC-ACC-ACC-GTG-CCA-TCC-GCC-GCC-ACC-TTG-CCA-GCC-GCC-ACC-ACC	Design primers
2779925	CGACGGCGGCGGCGGCGGCGACGC	Design primers
2781429	CTTCCTCTTCGTCATCCTCTTCCTC	Design primers
2791315	GTCTTGGCTGCGGGCGTCTTTGCAGCGGGTGACTTGGCGGCGGCC	Design primers
2816225	GCCGGTGCGGCCGGCGCGGCCGGTGCGGCCG	Design primers
2902400	CTGCCGTGGATGCTGCTGTGGGTGCTGCCGTGGTTC	Design primers
2933425	CGCGATCCTGGTACCCTCGGTTCTGGTACCCGCGGTCCTGATAGCCG	Design primers
2937104	CCG-CCG-CCG-CCA-CCA-CCG-CCT-CCG-CCG-CCG	Design primers
3036141	CCGGTCGCCGATCGCTGGTCGCCG	Design primers
3123701	GCTTCA-ACTTCA-ACTTCA-ACTTCA-GC	Design primers
3180283	CATCACCACCACCACCACGATCAC	Design primers
3188216	GCCGCCGCCACCTCCGCCGCCGCTGCGGCCG	Design primers
3219566	ACGCTGCACCGACTTCGGCTGAACCGACTTGGGCTGAACCGACTT	Design primers
3222109	GCTGGCGTTGGCGCTAGCGCTAGCG	Design primers
3234153	TGTCGCTGTCGTTCTCGCTGCCGC	Design primers
3243730	GCCGGC-GCCGAC-GCCGAC-GCCGGC-G	Design primers
3303583	GGCGGCGCCGGCGGCCGCGGCGGAG	Design primers
3344919	CCGGCGCCGGTGCCGGCGCCCGCG	Design primers
3362456	CCACGCC-GCACGCC-GCACGCC-GCACGCC	Design primers
3385025	CACGAGCACGAACTCGAGCACGAGC	Design primers
3436186	CGATAACGGCAGCGCTTGGATAGCGGCGGCGCTTCGATCACGTCGGCGCTTCG	Design primers
3485701	GGGCGCTTCAGGCTTGGCAGCTTCAGGCTTGGCAGCTTCCGGCTTGGCCGCTTCGGGCTG	Design primers
3508703	CGCCTTCTTCGGCGCCGCTTTCTTGGTCGCCGCCTTCTTCGCTGC	Design primers
3519683	ATGCCCATGCCGATGCTCATGCCG	Design primers
3532391	AGCCAAGAAGGCGCCGGCCAAGAAGGCTGCTGCCAAGAAGGCTTC	Design primers
3547700	CAGCGCCAGCCCCAGCACCAGCGC	Design primers
3588478	CCAAGAAGGCAGGCAAGAAGGCCGCCAAGAAAGCCGCCAAGAAAGCCGCCAA	Design primers
3674051	TCG-TCG-TCA-TCG-TCG-TCA-TCA-TCG-TCG-TCG	Design primers
3675871	GTCATCTTCCTCGTCGTCATCCTCATCGTCGTCATCGCCGTCGTC	Design primers
3706676	CACCGGCGCCGGCAGCGGCATCGGC	Design primers
3737010	CCGTCACCTTCACGGTCACCGTCC	Design primers
3738668	TGCTGCTGCCGCTGCTGTTGCTGGTG	Design primers
3808944	CGGCGGCGCCGGCTGCGGCGGCCGCG	Design primers
3973048	CTGCTGCTCCTGCTGCTGGTGCTG	Design primers
3982770	CGGCGCCGGTGCCGGTGCCGCCGCC	Design primers
4000939	AGCGCCATCGCCAGCGTCAGCGTC	Design primers
4087297	GGCGGCGACGCATCCTTGGACGGCGACGCGTCCTTGGGTGGCGCGGCATCCTTGG	Design primers
4108298	GCGGTCGCGGTGGCGATCGCGCTC	Design primers
4321535	ACGAAGGCA-GCGAAGGCA-GCGAAGGCA	Design primers
4389106	TGCGGGCTGAACCTCCGATCATGCGGGCGGACCCGCCGATCCTGCGGCCCGAGCCGCCGATCA	Design primers
4563341	CCGGCGGCGGCGCCAGCGTCGGCG	Design primers
4704880	CAGCGC-CAGCGC-CCGCGC-CAGCGC	Design primers
4762241	ACGATGCCGATGATGATGACGACGAC	Design primers
4765420	TG-AA-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG-AG	Design primers
4819539	GCCTCGGCGTCGGCCGCGGTCTCG	Design primers
4820953	ACGACGACGAGGACGAAGACGGCG	Design primers
4930494	TCCTCGTACTCGACCTCGGCCTCG	Design primers
4938639	CCG-ACG-ACG-ACG-GCG-ACG-GCG-ACG	Design primers
4949392	GCCGCACCCGCAGCCGCAGCCGCG	Design primers
5061952	TCCCGTCTCGTTCCGTCCCGTCCAG	Design primers
5131581	GCGACGACGACGGCGACAGCGAAG	Design primers
5135534	CAGCAGCAGCCGCAGCACCAGCAC	Design primers
5168292	CGGCCGGGT-CGGCCGGGT-CGGCGGGGT	Design primers
5173734	GTCGGCGTCGGTGTCAGCGACGGC	Design primers
5217788	GAACAGGATCAGGACCAGGATCAG	Design primers
5303573	CACCCC-CACCCC-CGCCCC-CTCCCC	Design primers
5335565	CTAGAAGCCTAGGAGCCTAGGAGCCT	Design primers
5350400	GCCTTGCTGGCCCTGCTGCCCTTGCTG	Design primers
5440496	CTCGC-CGCGC-CGCGC-CGCGC-CGCGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

55055

GCGCCGCCGCGCCGCGCCGCCGCCG