Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Photorhabdus luminescens

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
198414	TT-TT-TT-TT-AT-TT-TT-TT-TT-GT-TT-TT-TT	Design primers
205840	AGTAATACGTTATTAGTAATACATTTTTAGTAATACATTTTTAGTAATA	Design primers
222377	TGACTGTTTTAAATATCGATTGTTTTAAATATCGATTGCTTTAAATAT	Design primers
228674	TGTTCTC-CGTTCTC-CGTTCTC-CGTTCTC-CGTTCTC-TGT	Design primers
247677	GGTATTGTATTTGTAGGTGTTGTATTTGCGGGTACGGTATTTATAG	Design primers
365137	TGTGGGAATTT-ATTGGGAATTT-ATTGGGAATTT	Design primers
503337	TTTAATACT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT-GTTAAAGCT	Design primers
586165	CTTCAACTTCGACCTCAATTTCAAC	Design primers
748518	GTTGTTGTGATGGTAATTGCTGTGATGGAAATTGTTGTGATGGAA	Design primers
784390	GTAATTGCACTATATTTAATTGTACTACATTTAATTGTACTATATTTAATTGCACTATAT	Design primers
838821	TATTTTTTTTCATGTTTTTTTAATTTTGTTTA	Design primers
848441	TATTTGAAATTAATTTATGAAATTAATTTATGAAATTAA	Design primers
886972	TTATTT-TCATTT-TCATTT-TTATTT-T	Design primers
888216	TTTTTCATTATTTTTTACTATTTTTCATATTTT	Design primers
892323	CCTGATTGCTGTCAC-CGAAATTGCTGTCAC-CGAAATTGCTGTCAC-C	Design primers
908824	CAAAACTATTCGTTT-CAAACCCATTCGTTT-CAAACCCATTTGTTT-CAAACACATTCGTTT-CAAACACATTCGTTT-CAGACCCATTCGTTT	Design primers
926546	TATAGGTATTGTTTATAGGCATTGTTTATAGGCATTATTTATAGGTATTATTTATAGGTATTATTTATAGGTATTGTG	Design primers
947466	AAATGACAG-CATTAACAG-CATTAACAG-CATTAACAG-CATTAACAG-CATTAACAG-CATTAACAG-CATTAACAG	Design primers
947768	AAAAGAGAAACGAGAAACGAGAAAA	Design primers
948551	GTAAAACAATATTGGTAAAAAAATATTGGTAAAACAACATCGGTAAAACA	Design primers
994861	TTTAATA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-TAATCTA-T	Design primers
1005405	AA-AA-AA-AA-GA-TA-AA-AA-AA-CA-AA-AA-AA-AA-TA-AA-AA-AA-A	Design primers
1028185	AAACCACAACGAAACCTACAACGAAACCTACAACGAA	Design primers
1053667	AGTCAGA-ACTCAGA-ACTCAGA-ACTCAGA-A	Design primers
1065815	ATGATTAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-ACTGTAAA-A	Design primers
1183959	ATTATTTTATTTTTTTATTAATTTAT	Design primers
1360502	GTTAATT-TGTAATT-TGTAATT-TGTAATT-TGTAATT-TGTAATT	Design primers
1396333	CTTCATCTTCACCATCATCTTCGT	Design primers
1463407	TTTTTATTTCTTATTTCTTATTTCTTATTTTTTACT	Design primers
1577633	GTTG-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA	Design primers
1589111	TTAT-TTAA-TTAA-TTAT-TTAA-TTAT-TTAA-TTAT-TTAA-TT	Design primers
1642951	TTTATAG-ATTATAG-ATTATAG-ATTATAG-ATTATAG	Design primers
1724697	TGTTTTTTGTTGTTTTTGTTTTTTTTATGTTGT	Design primers
1753102	TATAAAATAATATTATTTAATTTAA	Design primers
1754140	GTAATGC-CTAATGC-CTAATGC-CTAATGC	Design primers
1784463	TATCGGTATAATTTATATCGGCATTGTTTATATCGGTATTGCTTATATCGG	Design primers
1793029	TGATGAGGATGATGGTGACGATGAT	Design primers
1838960	ATTTTTAATAATTTTAATAATTTTAAT	Design primers
1841475	GGCGTGTTATTTCTATTGTTTGTTATTTCTATTGCTTGTTATTTCTAT	Design primers
1852844	TTTCTCTTG-TTTCTCTTG-TTTCTGTTG-TT	Design primers
1902586	TGAATACAAAGTTGTAAGATACAAAGTTGTAAAATACAAAGTTGCT	Design primers
1911210	TGTGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA-ACCGCAGCA	Design primers
1925257	TAGGTCGAGAGGAAGGTCGAGAAGAAGGCCGAGAGG	Design primers
1963839	AAGCACGTCAAG-AAGGACGTCAAG-AAGGACGTCAGG-AAGGACGTCAAG-AAGGGCGTCAAG-AAG	Design primers
1964170	AAAGCACGTCAAGAAGGACGTCAAGAAGGACGTCAA	Design primers
1974999	GATTTAATGGGATATTGTTTAATGGAATATTGTTTAATGGAATAT	Design primers
1988267	TACGATTGTTTTTAGCATGATTCTTTTTAGCATGATTGTTTTTAG	Design primers
1992357	GACGTCCTTCCTGACGCCCTTCTTGGCGTCCTTCTTG	Design primers
2000337	TTCTTG-TGATTG-TGATTG-TGATTG-TGATTG-TGATTG-T	Design primers
2032314	TATCGGCTAATACTTTGTTGGTTAATACTTTATTGGCTAGTGCTTTAT	Design primers
2037683	GTTTCTGCATTGTTTTTGGTTTCTGCAATGTGTTTGATTTTTGCATTGCTTTTG	Design primers
2040389	GCCTTGCACAATACCTTGCTCAATACCTTGTTCAATACCCTGCTCAATACCTTGCTCAATACCTTGCTTGAT	Design primers
2040782	GGCCTTGCACAA-TACCCTGCTCAA-TACCTTGTTCAA-TACCCTGCTCAA-TACCTTGCTCAA-TACCTTGCTCAA-TGCCTTGCTCAA-TACCTTGCTCAA	Design primers
2053710	TGTAAT-TGTTCT-TGTTCT-TGTTCT-TGTTCT-TGTTCT-TG	Design primers
2071042	AGGGCAGAGGACAGAAGGCAGAGG	Design primers
2099758	ACTCTTT-TCCTGTT-TCCTGTT-TCCTGTT-TCCTGTT-TCCTGTT-TCCTGTT-TCCTGTT-TCCTGTT	Design primers
2113528	ATTTATTA-AATTATTA-AATTATTA-AATTATTA-A	Design primers
2119970	CTTGGTTATCGCTATATTGGTTATCACTATATTGGTTATTACTAT	Design primers
2163025	AAAATTATGCAT-GTAATTATGCAT-GTAATTATGCAT	Design primers
2169934	AAATGA-ATATGA-ATATGA-ATATGA-A	Design primers
2199006	ATAAAG-ATACAG-ATACAG-CTAAAG	Design primers
2232579	ATTGGTATTGCTGTTGGTATTGCT	Design primers
2235797	GTCCTTTTCAATACTGTTCTTTTCAATACTATCTTTTTCAACACTG	Design primers
2266756	AGAGGACAGAAGACAGAGAACAGATGAC	Design primers
2276585	ATTATGTT-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATT	Design primers
2309361	GCTGGTTT-TCTGGTTT-TCTGGTTT-G	Design primers
2447529	GTGTTCACGGAGAGTGTGTATTAACGGAAAGTGTGTATTAACGAAGAGTGTGT	Design primers
2454906	TTGAATATTGTTTTGTAC-TGAAATATTGTTTTGTAC-TGAAATATTGTTTTGCAC-TGAAATATTGTTTTGCAC-T	Design primers
2484073	AATTACCCTT-AATTACCCTT-AATTCCCATT-A	Design primers
2498247	AACATGAAGATGACCATGAACATCA	Design primers
2633862	GTGCTAAATTGAAAGTACTAAATCGAAAGTGCTAAATCGAAAGTGCTAAAT	Design primers
2698159	ATTCCGCATGGTTTTGTAGCTCGGCATGGTTTTGTAACTCGGCATGGTTTTGTAA	Design primers
2762263	TTGTGTAGTGCTATGTATAGTGCTATGTGTAGTGCTATGTGTAGTGCT	Design primers
2906187	ATTTTTCGATTAATTACTGTTTTCTGATTAATTACTATATTTCAATTAATTACAAT	Design primers
2946074	TACTATTTTTTCTACTGATGTTTTTTCTACTGATGTTTTTTCTACTGATACTTTTTCTACTAATGATTTTTCTACTA	Design primers
3043900	AAAAAATAAAAAAATAACAAACAAAA	Design primers
3089045	AAATAAAAAACACTAAAAAACACTAAAAAA	Design primers
3089388	TGCACCGCCACCTGTTCCACCTCCTGCACCGCCTCCTGTTCCACCGCCTGTTCCACCACCTGTTCCACCACCTG	Design primers
3089463	TCCACCACCTGTTCCGCCACCTGTTCCACCGCCTGTTCCACCGCCTGTTCCACCACCTCC	Design primers
3106701	TCAT-ACAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-TAAA-T	Design primers
3201813	CTCTAGTACAATGATCTTTTAGTACAATGATCTTTTAGTACAATGGTC	Design primers
3267007	ATGGATTTAGAACAAGCTATTGATTTAGAAAAAACTATTGATTTAGAAAAAACTAT	Design primers
3285174	TCTTTTT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT-ACAGATT	Design primers
3285715	TCATAGATA-TCATAAATA-TCATAAATA-TCATAAATA-TCA	Design primers
3300286	TAAACCAAAAAACTAAACCTAAAAGCTAAACCTAAAAAC	Design primers
3301407	GTTTAACCAT-ATTTAACTAT-ATTTAACTAT-ATTTAACTAT	Design primers
3326149	TTATCAAAACGTTTATCTATAGATTCAAAACGTTTATCCATAACATCGAAACGTTTATCTATA	Design primers
3372742	ACGAAGACATTGTTGTTTCTGAAGACGTTGTTGTTTCTGAAGACATTGTTATTT	Design primers
3374995	ACATTTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG-TTTATTAG	Design primers
3409423	CTCTGGTAAAATTTTGGTAAAACTCTGGTAAAAC	Design primers
3470385	TAATTATAATTTTAATAATAAATA	Design primers
3555367	ACTATTTCAAA-ACTGATTCAAA-ACTGATTCAAA-ACT	Design primers
3633184	TAGTGAATAAATAGGGCATAAACAGTGAATAAAT	Design primers
3664233	AATTAGCAACAACCAATTAGCAATAACCAATTAGCAATGACCAATTA	Design primers
3691158	AGGTATCAAGCAAGGTATTGAGCAAGGTATTGAACAAGGTATTGAACAAGGTATTGAGCAGGGTATTGTGCAAGG	Design primers
3691558	AAGCAAGGTATTGAACAAGGTATTGAACAAGGTATTGAGCAGGGTATT	Design primers
3714941	ATAAACCTCAAAACAAACTTCAAAACAAACTTCAAAATAAA	Design primers
3715014	TT-AT-TT-TC-TT-TT-TC-TT-TT-TC-TT-TT-TC-TT-TT-TC-TT-TT-T	Design primers
3737410	ATTTATTATAATTTATTTTTATGTTTTATA	Design primers
3864859	ATTTAAAAGTGTAATAATTGTTTAAAAGTGTAAGAGTTGTTTAAAAGTGTAAACATT	Design primers
3877024	CAACACTATTGCCTTCACCCCCATTGCCTTCAACCCGATTGTCTTCA	Design primers
3881843	GACAGAAAACAGAAGACAGAATACAGAAGA	Design primers
3913004	TAATGGATGTCCGAATTATAATGCATGTACGAAATATAATGCATGTACGAAATA	Design primers
3996064	TAATTTCATTTAAATTATTTGAATT	Design primers
4077999	AAATAAATATAAAAATTAAAATAAA	Design primers
4126356	GATTGATTTAAATGATATTGTTTTAAATAATATTGTTTTAAATGA	Design primers
4179318	TTTTTCACCTTT-CTCTTCACCTTT-CTTTTCACCTTT-CTTTTCACCTTT-TTTTTCACCTTT	Design primers
4192080	TCCTCCATTTCCACCATTCCCTCCATT	Design primers
4193972	CCTCCATTGCCTCCATTTCCTCCAGTGCC	Design primers
4194052	ATTACCCCCATTCCCCCCATTACCCCCA	Design primers
4194277	TTTACTATCTTTACCATCTTTACCATC	Design primers
4207008	AAAGGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT-TACAGGTTT	Design primers
4207432	ACAGGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC-TATCGTTAAAAC	Design primers
4266011	CCGGAGTATTT-AAGGAGTATTT-AAGGAGTATTT-AAGGAGTATTT-AAGGAGTATTT	Design primers
4318103	TTGGGTTTAAAGGCTATGGGTTTAAAGACTATGGGTTCAAAGACTATGTGTTTAAAGACTATGTGTTTAAAGACT	Design primers
4406068	AAACAGAATCAGCAACAGATACAGAAA	Design primers
4406545	GTTTAATTTTC-ATTTAAGTTTC-ATTTAAGTTTC-ATTTAAGTTTC	Design primers
4419452	ATTAT-AATAT-AATAA-AATAT-AATAT-AATAT-A	Design primers
4460070	TTCATTTCA-TTCATTTCA-CTCATTTCA-TTCA	Design primers
4465837	TCA-TCA-TCA-TTA-TCA-TTA-TCA-TTA-TCA	Design primers
4474982	AAAATTACCATTTACAGCATCACCATTTACAGCATCACCATTTACAA	Design primers
4476858	TACCTTCTTCTC-GGCCTTCTTCTC-GGCCTTCTTCTC-GGCCTTCTTCTC-GGCCTTCTTCTC	Design primers
4592263	AATCTGTTTCTCTATTTATCTATTTATCTATTTATCTATTTATCTATTTATCTATTTATCTATTA	Design primers
4594262	ATAATTAA-CGATTTAA-CGATTTAA-CGATTTAA-CGATTTAA-CGATTTAA	Design primers
4604545	AGGTGAC-AGAAGAC-AGAAGAC-AGAAGAC-AGAAGAC-AGAAGAC-AG	Design primers
4609778	ATCCATATAAAAACCCACATAAAACCCCATATAAAAA	Design primers
4613314	TCCACCCATCAG-GCTACCCATCAG-GCTACCCATCAG-GCTACCCATCAG	Design primers
4642802	ACA-ACA-CCA-ACA-CCA-ACA-CCA-ACA	Design primers
4662049	AAAAGAAAAAAAACGAACAGAAAAA	Design primers
4681307	AGTCAGCGGTCAGCAGTCAGCGGTCAGC	Design primers
4779508	GAACGTAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-GTAAATAGTTATTGAA-G	Design primers
4822833	CCGCCCATACCGCCCATGCCACCCATACCGCC	Design primers
4831659	AAAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA-TCAA	Design primers
4949571	AATTAAATAAAAATAAATAAAATTCA	Design primers
4958909	TTTACCTTCCTC-TCGACCTTCCTC-TCGACCTTCCTC-TCGACCTTCCTC-T	Design primers
4958959	GACCTTCTTCTC-GACCTTCTTCTC-GACCTTCTTCTC-GACCTTCTTCTC-GGCCTTCTTCTC-GACCT	Design primers
4963826	AATGT-ATCAT-AATAT-AATAT-AATAT-AATAT-AATAT-AATAT-AATAT-AAT	Design primers
4971297	GTGTTTTTACACAATGCATCTTTACACAATGTATCTTTACACAATGT	Design primers
5045972	CCGAGCTTACCGCTAAGCTTACCGCTGAGCTTACCGC	Design primers
5129640	AAAATAATTTAGACTAATTTAAAACAATATAAAA	Design primers
5131239	GCAAT-AGAAT-AGAAT-AGAAT-AGAAT-AGAAT	Design primers
5178634	AGATTAAC-GGATTAAC-GGATTAAC	Design primers
5179993	CTCTCTCTC-ATCTCTCTC-ATCTCTCTC	Design primers
5207876	AGCAGCAGCAGCAGCAGAAGCAGAAGCAG	Design primers
5207906	AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-A	Design primers
5282274	TGCACGACC-TGCACGACC-TGCACGGCC	Design primers
5303310	AACATCCCC-ACCATCCCC-ACCATCCCC-A	Design primers
5393655	TGATAATGACAATGATAATAATAAT	Design primers
5531096	ACTTATTA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-AGCAAATA-A	Design primers
5531266	TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATAAG-TAAATA	Design primers
5532729	TACGGGTA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TAAGTAAA-TA	Design primers
5566562	CTCGTTTGCTA-CTACTTTGCTA-CTACTTTGCTA-CT	Design primers
5594341	TCTTTTCTTCTGTTTTCTTATATTTT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

198414

TT-TT-TT-TT-AT-TT-TT-TT-TT-GT-TT-TT-TT