Microsatellites /Tandem Repeats database

Genome: Photorhabdus luminescens

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
222381TGTTTTAAATATCGAT-TGTTTTAAATATCGAT-TGCTTTAAATATCGAT-TDesign primers
228675GTTCTCC-GTTCTCC-GTTCTCC-GTTCTCC-GTTCTCDesign primers
365138GTGGGAATTTA-TTGGGAATTTA-TTGGGAATTTADesign primers
503343ACTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAA-GCTGTTAAADesign primers
784398ACTATATTTAATTGTACTACATTTAATTGTACTATATTTAATTGCACTATATTTDesign primers
848445TGAAATTAATTTA-TGAAATTAATTTA-TGAAATTAAGTTA-TDesign primers
892326GATTGCTGTCACCGA-AATTGCTGTCACCGA-AATTGCTGTCACCGADesign primers
908835GTTTCAAACCCATTCGTTTCAAACCCATTTGTTTCAAACACATTCGTTTCAAACACATTCGTTTCAGACCCATTCGTTTDesign primers
926570TTTATAGGCATTA-TTTATAGGTATTA-TTTATAGGTATTA-TTTATAGGDesign primers
947469TGACAGCAT-TAACAGCAT-TAACAGCAT-TAACAGCAT-TAACAGCAT-TAACAGCAT-TDesign primers
947530ATTAACAGT-ATTAACAGT-ATTAACAGT-ATTAADesign primers
994864AATATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAA-TCTATAADesign primers
1053669TCAGAAC-TCAGAAC-TCAGAAC-TCAGAAC-TCAGDesign primers
1065818ATTAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACT-GTAAAACTDesign primers
1360503TTAATTT-GTAATTT-GTAATTT-GTAATTT-GTAATTT-GTAATTTDesign primers
1463410TTATTTC-TTATTTC-TTATTTC-TTATTTDesign primers
1577637TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTADesign primers
1589119TTAATTAT-TTAATTAT-TTAATTAT-TTAATTDesign primers
1642952TTATAGA-TTATAGA-TTATAGA-TTATAGA-TTATAGA-TTADesign primers
1754141TAATGCC-TAATGCC-TAATGCC-TAATGCCDesign primers
1911212TGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAAC-CGCAGCAACDesign primers
1925258AGGTCGAGAGGAAGGTCGAGAAGAAGGCCGAGAGGAAGGTDesign primers
1963843ACGTCAAGAAGG-ACGTCAAGAAGG-ACGTCAGGAAGG-ACGTCAAGAAGG-GCGTCAAGAAGGDesign primers
1964171AAGCACGTCAAG-AAGGACGTCAAG-AAGGACGTCAAG-AAGDesign primers
1975001TTTAATGGGATATTGTTTAATGGAATATTGTTTAATGGAATATTGDesign primers
1992374CCTTCTTGGCGTCCTTCTTGGTGTCCTTCTTGACGTDesign primers
2000339CTTGTG-ATTGTG-ATTGTG-ATTGTG-ATTGTG-ATTGTGDesign primers
2040397CAATACCTTGCTCAATACCTTGTTCAATACCCTGCTCAATACCTTGCTCAATACCTTGCTDesign primers
2040814TCAATACCCTGCTCAATACCTTGCTCAATACCTTGCTCAATDesign primers
2040856CCTTGCTCAATA-CCTTGCTCAATA-CCTTGCTCAATG-CCTTGCTDesign primers
2053715TTGTTC-TTGTTC-TTGTTC-TTGTTC-TTGTTC-TTGDesign primers
2099761CTTTTCC-TGTTTCC-TGTTTCC-TGTTTCC-TGTTTCC-TGTTTCC-TGTTTCC-TGTTTCC-TGTTTCCDesign primers
2113530TTATTAAA-TTATTAAA-TTATTAAA-TTATTAAADesign primers
2163026AAATTATGCATG-TAATTATGCATG-TAATTATGCATGDesign primers
2169936ATGAAT-ATGAAT-ATGAAT-ATGAAT-ADesign primers
2276591TTATTTTT-TAATTTTT-TAATTTTT-TAATTTTT-TAATTTTT-TAATTTTT-TDesign primers
2447535ACGGAGAGTGTGTATTAACGGAAAGTGTGTATTAACGAAGAGTGTGTATTAADesign primers
2454909AATATTGTTTTGTACTGA-AATATTGTTTTGTACTGA-AATATTGTTTTGCACTGA-AATATTGTTTTGCACTGADesign primers
2633872GAAAGTACTAAATCGAAAGTGCTAAATCGAAAGTGCTAAATCGDesign primers
2698164GCATGGTTTTGTAGCTCGGCATGGTTTTGTAACTCGGCATGGTTTTGTAACTCGGDesign primers
2762264TGTGTAGTGCTATGTATAGTGCTATGTGTAGTGCTATGTGTAGTGCTATDesign primers
2946077TATTTTTTCTACTGA-TGTTTTTTCTACTGA-TGTTTTTTCTACTGA-TADesign primers
3089419CCTCCTGTTCCA-CCGCCTGTTCCA-CCACCTGTTCCA-CCACCTGTTCCA-CCDesign primers
3089479CCACCTGTTCCA-CCGCCTGTTCCA-CCGCCTGTTCCA-CCACCTDesign primers
3106706CAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAAT-AAATDesign primers
3201816TAGTACAATGATCTTT-TAGTACAATGATCTTT-TAGTACAATGGTCTTT-TAGTACAATDesign primers
3285177TTTTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACA-GATTACADesign primers
3285721ATATCATAA-ATATCATAA-ATATCATAA-ATATCADesign primers
3301408TTTAACCATA-TTTAACTATA-TTTAACTATA-TTTAACTATA-TTDesign primers
3372744GAAGACATTGTTGTTTCTGAAGACGTTGTTGTTTCTGAAGACATTGTTATTTCTDesign primers
3374997ATTTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTT-TATTAGTTDesign primers
3555371TTTCAAAACTG-ATTCAAAACTG-ATTCAAAACTGDesign primers
3691166AGCAAGGTATTG-AGCAAGGTATTG-AACAAGGTATTG-AACAAGGTATTG-AGCAGGGTATTGDesign primers
3691559AGCAAGGTATTGAACAAGGTATTGAACAAGGTATTGAGCAGGGTATTGDesign primers
3715016ATTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCDesign primers
4179319TTTTCACCTTTC-TCTTCACCTTTC-TTTTCACCTTTC-TTTTCACCTTTT-TTTTCACCTTTC-TDesign primers
4207011GGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTAC-AGGTTTTACDesign primers
4207434AGGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTA-TCGTTAAAACTADesign primers
4266012CGGAGTATTTA-AGGAGTATTTA-AGGAGTATTTA-AGGAGTATTTA-AGGAGTATTTADesign primers
4318116CTATGGGTTTAAAGACTATGGGTTCAAAGACTATGTGTTTAAAGACTATGTGTTTAAAGACTADesign primers
4406546TTTAATTTTCA-TTTAAGTTTCA-TTTAAGTTTCA-TTTAADesign primers
4419454TATAA-TATAA-TAAAA-TATAA-TATAA-TATAADesign primers
4476859ACCTTCTTCTCG-GCCTTCTTCTCG-GCCTTCTTCTCG-GCCTTCTTCTCG-GCCTTCTTCTCG-ACCTDesign primers
4592269TT-TC-TC-TA-TT-TA-TC-TA-TT-TA-TC-TA-TT-TA-TC-TA-TT-TA-TC-TA-TT-TA-TC-TA-TT-TDesign primers
4594264AATTAACG-ATTTAACG-ATTTAACG-ATTTAACG-ATTTAACG-ATTTAACG-ADesign primers
4604548TGACAGA-AGACAGA-AGACAGA-AGACAGA-AGACAGA-AGACAGADesign primers
4613315CCACCCATCAGG-CTACCCATCAGG-CTACCCATCAGG-CTACCCATCAGG-CDesign primers
4642803CAACAC-CAACAC-CAACAC-CAACAC-CAADesign primers
4779512GTAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAA-ATAGTTATTGAAGTAADesign primers
4831660AAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAAT-CAATDesign primers
4958911TACCTTCCTCTC-GACCTTCCTCTC-GACCTTCCTCTC-GACCTTCCTCTCDesign primers
4958960ACCTTCTTCTCG-ACCTTCTTCTCG-ACCTTCTTCTCG-ACCTTCTTCTCG-GCCTTCTTCTCG-ACCTDesign primers
4963833CATAA-TATAA-TATAA-TATAA-TATAA-TATAA-TATAA-TATAA-TATAA-TATAADesign primers
4971302TTTACACAATGCATCTTTACACAATGTATCTTTACACAATGTATCTDesign primers
5045974GAGCTTACCGCTAAGCTTACCGCTGAGCTTACCGCADesign primers
5131240CAATA-GAATA-GAATA-GAATA-GAATA-GAATADesign primers
5166791TACTATGAC-TACTATGAC-TACTATGACDesign primers
5178635GATTAACG-GATTAACG-GATTAACG-GADesign primers
5179994TCTCTCTCA-TCTCTCTCA-TCTCTCTCADesign primers
5207878CAG-CAG-CAG-CAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAG-AAG-CAGDesign primers
5303312CATCCCCAC-CATCCCCAC-CATCCCCAC-CDesign primers
5531099TATTAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGC-AAATAAGCDesign primers
5531244AATAAGCA-AATAAGCA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGTA-AATAAGDesign primers
5532734GTATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGTDesign primers
5566565GTTTGCTACTA-CTTTGCTACTA-CTTTGCTACTADesign primers

Please help us improve this resource by reporting problems, suggestions etc.