This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Percentaje of mismatches allowed within the tandem repeats:
0 |
0.1 |
0.2
| Position | Sequence | |
| 228675 | GTTCTCC-GTTCTCC-GTTCTCC-GTTCTCC-GTTCTC | Design primers |
| 365139 | TGGGAATTTAT-TGGGAATTTAT-TGGGAATTTAT-TGGG | Design primers |
| 503344 | CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAAAG-CTGTTAA | Design primers |
| 892327 | ATTGCTGTCACCGAA-ATTGCTGTCACCGAA-ATTGCTGTCACCGAA | Design primers |
| 926579 | ATTATTTATAGGT-ATTATTTATAGGT-ATTATTTATAGGT-ATT | Design primers |
| 947471 | ACAGCATTA-ACAGCATTA-ACAGCATTA-ACAGCATTA-ACAGCATTA-ACAGCATTA-ACAGCATTA-ACAG | Design primers |
| 994866 | TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAATC-TATAA | Design primers |
| 1053669 | TCAGAAC-TCAGAAC-TCAGAAC-TCAGAAC-TCAG | Design primers |
| 1065821 | AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAACTGTA-AAA | Design primers |
| 1360504 | TAATTTG-TAATTTG-TAATTTG-TAATTTG-TAATTTG-TAATTTG-TAATTT | Design primers |
| 1463410 | TTATTTC-TTATTTC-TTATTTC-TTATTT | Design primers |
| 1577637 | TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA-TTTA | Design primers |
| 1589119 | TTAATTAT-TTAATTAT-TTAATTAT-TTAATT | Design primers |
| 1642952 | TTATAGA-TTATAGA-TTATAGA-TTATAGA-TTATAGA-TTA | Design primers |
| 1754141 | TAATGCC-TAATGCC-TAATGCC-TAATGCC | Design primers |
| 1911213 | GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAACC-GCAGCAA | Design primers |
| 1964175 | ACGTCAAGAAGG-ACGTCAAGAAGG-ACGTCAAGAAGG | Design primers |
| 2000340 | TTGTGA-TTGTGA-TTGTGA-TTGTGA-TTGTGA-TTGTGA-TT | Design primers |
| 2053715 | TTGTTC-TTGTTC-TTGTTC-TTGTTC-TTGTTC-TTG | Design primers |
| 2099763 | TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TTTCCTG-TT | Design primers |
| 2113530 | TTATTAAA-TTATTAAA-TTATTAAA-TTATTAAA | Design primers |
| 2163027 | AATTATGCATGT-AATTATGCATGT-AATTATGCATGT-A | Design primers |
| 2169936 | ATGAAT-ATGAAT-ATGAAT-ATGAAT-A | Design primers |
| 2276593 | ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTTA-ATTTTTT | Design primers |
| 3089434 | CCTGTTCCACCA-CCTGTTCCACCA-CCTGTTCCACCA-CCTGTTCC | Design primers |
| 3106707 | AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AATA-AAT | Design primers |
| 3285179 | TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TTACAGA-TT | Design primers |
| 3285721 | ATATCATAA-ATATCATAA-ATATCATAA-ATATCA | Design primers |
| 3301415 | ATATTTAACT-ATATTTAACT-ATATTTAACT-ATATT | Design primers |
| 3374999 | TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTAGTTTA-TTA | Design primers |
| 3555372 | TTCAAAACTGA-TTCAAAACTGA-TTCAAAACTGA | Design primers |
| 3715017 | TT-TT-CT-TT-TT-CT-TT-TT-CT-TT-TT-CT-TT-TT-CT-TT-TT-CT-TT-TT-CT-T | Design primers |
| 4207012 | GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTTTTACA-GGTT | Design primers |
| 4207440 | AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACTATCGTTA-AAACT | Design primers |
| 4266013 | GGAGTATTTAA-GGAGTATTTAA-GGAGTATTTAA-GGAGTATTTAA-GGAGTATTTAA | Design primers |
| 4406552 | TTTCATTTAAG-TTTCATTTAAG-TTTCATTTAAG-TTTC | Design primers |
| 4476860 | CCTTCTTCTCGG-CCTTCTTCTCGG-CCTTCTTCTCGG-CCTTCTTCTCGG-CCTTCTTCTCG | Design primers |
| 4592273 | TCTATTTA-TCTATTTA-TCTATTTA-TCTATTTA-TCTATTTA-TCTATTTA-TCTATT | Design primers |
| 4594266 | TTAACGAT-TTAACGAT-TTAACGAT-TTAACGAT-TTAACGAT-TTAACGAT-TTAA | Design primers |
| 4604549 | GACAGAA-GACAGAA-GACAGAA-GACAGAA-GACAGAA-GACAGAA-GA | Design primers |
| 4613317 | ACCCATCAGGCT-ACCCATCAGGCT-ACCCATCAGGCT-ACCCATCAGGCT-ACCCA | Design primers |
| 4642803 | CAACAC-CAACAC-CAACAC-CAACAC-CAA | Design primers |
| 4779513 | TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGAAGTAAA-TAGTTATTGA | Design primers |
| 4831661 | AATC-AATC-AATC-AATC-AATC-AATC-AATC-AATC-AAT | Design primers |
| 4958912 | ACCTTCCTCTCG-ACCTTCCTCTCG-ACCTTCCTCTCG-ACCTTCCTCTCG-ACCTTC | Design primers |
| 4958967 | TCTCGACCTTCT-TCTCGACCTTCT-TCTCGACCTTCT-TCTCG | Design primers |
| 4963834 | ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAAT-ATAA | Design primers |
| 5131241 | AATAG-AATAG-AATAG-AATAG-AATAG-AATA | Design primers |
| 5166791 | TACTATGAC-TACTATGAC-TACTATGAC | Design primers |
| 5178635 | GATTAACG-GATTAACG-GATTAACG-GA | Design primers |
| 5179994 | TCTCTCTCA-TCTCTCTCA-TCTCTCTCA | Design primers |
| 5207888 | AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-AGCAGA-A | Design primers |
| 5303312 | CATCCCCAC-CATCCCCAC-CATCCCCAC-C | Design primers |
| 5531102 | TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAGCAAA-TAAG | Design primers |
| 5531267 | AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATAAGT-AAATA | Design primers |
| 5532736 | ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATAAGTAA-ATA | Design primers |
| 5566566 | TTTGCTACTAC-TTTGCTACTAC-TTTGCTACTAC | Design primers |
|
Please help us improve this resource by reporting problems, suggestions etc.