Microsatellites /Tandem Repeats database

Genome: Pirellula sp.

Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
278774CGGAAAAAGCTGAAGCGAAGCAAGCTGAAGCGAAGCAAGCTGAAGCGDesign primers
327754CGATTGA-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCTDesign primers
327818GCTTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCCTCTC-GCDesign primers
538452TCTTCGAAGTCGTCATCGAAATCGTCGTCGAAGTCATCTTCGDesign primers
624345TTTTCAATTTACAATTGTCAATTTDesign primers
817341CCCTGTGG-TCCTGTGG-CCCTGTGG-CCCTGTGG-CCCTGTGG-CDesign primers
1025971TGTTGTTGCTGCTGCTGTTGTTGCTGTTTCTGCTGCTDesign primers
1072321CCGTTGCCGTAGCCGTTACCGTTCCCGDesign primers
1172267GCTGGCTCGGACGGGGCTGAATCGGACGGGACTGAATCGGACGGGACTGAATCGGACGGGACTGAATCGGACGGGACTGAATCGGACGGGACTGAATCGGACGGGACTGGCTCGGACACGDesign primers
1182372GAGCTCGAGCACGAGCACGAGCACGAGCACGAGCTAGADesign primers
1277537GATGGACATGGAAATGGAGATGGCDesign primers
1342308TTC-TTC-TTG-TTC-TTT-TTC-TTC-TTCDesign primers
1493158CGGCATGGACATGGGCATGGATATGGGCATGGACATGGGCATGGATATDesign primers
1553137GGCGTTTTGGTTTGGACAGCCGTTTTAGCTTGGACAGCCGTTCTAGTTTGGACAGCCGTTCTAGTTTGGACAGDesign primers
1655050GCGCCGGGGTTCATCGCACCAGGGTTCATCGCGCCAGGCATCATCDesign primers
1906892CGGCCGGGTAGACTTGGGGCCCGGTAGATTTGGGACCCGGTAGACTTGDesign primers
2336113GTCACCGGCACCATCACCGTCATCDesign primers
2390751CCACGAGGGTCACGACCATGACGGGCACGATCATGAGGGTCATGADesign primers
2640334AACAAATAGACACGCAAACGAATCGACAGGCAAACGAATCGACAGGCAAACDesign primers
2803298CTGACGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGA-GTCCTGADesign primers
2803404TCCTGAGT-CCCTGAGT-CCCTGAGT-CCCTGAGT-CCCTGAGTDesign primers
2803445CCTGTGCC-CCTGTGCC-CCTGTGCC-CCTGTGCC-CCTGDesign primers
2841145CGGCTT-CGGCTT-TGGCTT-CGGCATDesign primers
2890573GGCATGGGAATGGGCATGGGAATGGGAATGDesign primers
2907315AGGTCACCGCTCGATGTCACCGCTAGGGGTCACCGGTCGADesign primers
3139602CGGAAGCAGCGGCCCCAGAAGCAACGGCCCCGGCGGCAACGGCCCCGGDesign primers
3195375TGACGACGACGATGATGATGACCATGDesign primers
3220796TCCGCCCATACCGCCGCCGCCCATGCCACCGCCGCCCATGCCGCCDesign primers
3220842CCCATGCCGCCG-CCCATGCCGCCA-CCCATGCCGCCG-CCCATGCCGCCG-CCCATGCCGCCG-CCDesign primers
3477577GGAATGATGGGCGGCGGCATGGGAGGCATGGGCGGTGGCATGGGAGGAATGGGCGGCGGCATGGGDesign primers
3477688GGAATGGGTGGCGGCATGGGCGGCGGCATGGGAGGCDesign primers
3635576TGGCGGACAGTGCATGGCAGACAGTGCATGACAGACAGTGCADesign primers
3730686CCGTAACCCTGCATTCCCGATCCCTGCATTCCCGATCCCTGCATTCCDesign primers
3844037CTCAGGACCTCAGGGCCACAGGACDesign primers
3962923GATCTGCACAGGCCAATCTGCACAGGCCGATCTGTACTGGCCDesign primers
4018445CTACGGCTACTGGTACGGCAACGGDesign primers
4047858TACATCGCTTTGTTCAGCGTACGGAGCTTTGTTCAGCGTACGGAGCTTTGTTCAGCGTADesign primers
4144691GGGCA-GGGGA-GGGCA-GGGCA-GAGCA-GGGDesign primers
4147384TGG-TGG-TGG-CGG-TGG-CGG-AGG-TGGDesign primers
4218713AGCTGGTAGCTGATAGCTAGTAGCTDesign primers
4247233CTTCTTCTTCTTTTTCTTCTTCGTCDesign primers
4291701ATTTCTA-GCTTCTA-GCTTCTA-GCTTCTA-GCTTCTA-GCTTCTADesign primers
4291744CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGG-CTACTGTDesign primers
4291850GCTCTGTG-GCTCTGTG-GCTCTGTG-GCTCTDesign primers
4371755AGTCGCAAA-CGTCGCAAA-CGTCGCAAADesign primers
4374415CGGGG-CAGGG-TGGGG-CAGGG-CAGGG-CGGDesign primers
4446430ACATCG-GCATCG-GCATCG-GCATCGDesign primers
4610751ACACTG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAG-TCCGAGDesign primers
4610920CCGAGCACGAGT-CCGAGCACGAGT-CCGAGTCCGAGT-CCGAGCACGAGC-ACGAGCACGAGC-ACGAGCACGAGCDesign primers
4610993CGAGCA-AGAGCA-CGAGCA-CGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-AGAGCA-CGAGCA-AGAGCA-CGAGDesign primers
4618675CCCTG-CCCTG-CTCTG-CCCTG-CCCCG-CDesign primers
4630238ACCACGAG-CAATCGAG-CAATCGAG-CAATCGAG-CAATCGAG-CAATCGAG-CAATCGAG-CAATCGAG-CAATCGAGDesign primers
4630311ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGGDesign primers
4701333GCCAAACAAACCCAAACAACGCCAACCGAADesign primers
4704616GCACCGCCGGGAGGTTTGCCGCCACCGGGAGGTTTGCCGCCACCGGGAGGTTTGDesign primers
4747618TGCCC-TGCCC-CGCTC-TGCCC-TGCCC-TTCCCDesign primers
4779427GGCATGGGAGGAATGGGAGGCATGGGTGGDesign primers
4790632CTAGCTC-CTAGCTC-CTAGCTC-CTAGCTC-CTAGCTC-CTAGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTAGCTC-CTAGCTC-CTAGCTC-CTAGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTCGCTC-CTDesign primers
4790789GCTCCTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTC-GCAACTCDesign primers
4807575GACATGGGGATGGGGATGGACATGGACATGGGAATGGGCATGGGGATGGACATGDesign primers
4862176GTCCCTGT-GCCCCTGT-GCCCCTGT-GDesign primers
5043092GCCTAGC-TCCTAGC-TCCTAGC-TCCTAGCDesign primers
5043948GCCCT-GCCCT-GCCCT-CCCCT-GCCCC-GDesign primers
5079673CCCGCACGCCCCCGCCCACCCCAGCCCGCCDesign primers
5110990CAA-CAA-CAA-CAT-CAT-CAA-CAA-CAADesign primers
5344007TCCGCC-TCCACC-TCCACC-ACCGCCDesign primers
5389463GTAGCCTGATTCCCTGTAGCCGACTTCCCTGTAGCCGGATTCGCCDesign primers
5524759AACGCAAGGCAAAGCGACGCAACCCAACGGDesign primers
5601048AACCGGCGTGAGGCAAACCGGCGCGGCGCAAACGGGCGTGGGACAADesign primers
5632410AGG-AGG-CGG-TGG-TGG-TGG-AGG-AGG-CGG-TGG-TGG-AGG-AGG-CGG-TGGDesign primers
5670612CCA-CCG-CCG-CCA-CCG-CCT-CGG-CCG-CGA-CCG-CCG-CCG-CCA-CCA-CCGDesign primers
5690025GTCTTCCTCTTCGTCGTCGACTTCDesign primers
5807241AAAAGAGC-TGACGAGC-TGACGAGC-TGACGAGC-TGACGAGC-TGACGAGCDesign primers
5807295CGACGA-GCACGA-GCACGA-GCACGA-GCACGA-GCACGADesign primers
5807333ACGAGA-GCGAGA-GCGAGA-GCGAGADesign primers
5807981CGAAAAAA-AGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAACTGA-CGAADesign primers
5808154TGACGAAC-TGACGAGC-TGACGAGC-TGACGAGCDesign primers
5808208GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTA-GAAGCTGDesign primers
5855477CTCCGCGCTCTTCTGCGCTCTTCCGCGCTTDesign primers
6043590GGCCGTGGTCGTGGCCGCGGCGGTDesign primers
6089376CAGCAAATG-AAGCAAATG-AAGCAAATG-AAGCAAATGDesign primers
6380823TTCGCCAGGCGG-AACACAAGGCGG-AACACAAGGCGG-AACACAAGGCGG-AACACAAGGCGG-AACACAAGGCGG-AACACAAGGCGG-AACACAAGGCGGDesign primers
6726221GGCGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAG-CACGAGDesign primers
6726270TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGAAGC-TAGDesign primers
6867184TTGGGCTCGGGCTCGGGCTTGGGGTDesign primers
6875930GGGGGCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCT-AGCTTCTDesign primers
6876163CTTCTA-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGT-GCTCGTDesign primers
6876577TTTACAATTTGCAATTTTCAATTTDesign primers
6886004CCTGTGGC-CCTGTGGC-CCTGTGCCDesign primers
6919595GAGATG-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGC-ACGAGCDesign primers
6919734AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCT-AGAAGCTDesign primers
6972684AGATGTATAAGGTTGG-CTGTGTATAAGGTTGG-CTGTGTATAAGGTTGGDesign primers
6973307TTCGCAGCAAGGAGCGGGAGCTGGTTCGCAGCAAGGTGCTGGGGCTGGCTCACAGCAAGGTGCGGGAGCAGGDesign primers
6987177AGAGCTT-CTAGCTT-CTAGCTT-CTAGCTT-CTAGCTT-CTAGCTT-CTAGCTT-CTAGCTTDesign primers
6987234GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTTC-GTGCTDesign primers
6987394GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTGCTC-GTDesign primers

Please help us improve this resource by reporting problems, suggestions etc.