Microsatellites /Tandem Repeats database

Genome: Listeria monocytogenes str. 4b F2365

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
99750AAACAGCTAAAGAAACAGCAAATGAAACAACAAAAGADesign primers
168406AGTACCGCCAACACCAGTACCACCAACACCAATACCGCCTACTCCDesign primers
196956CGT-CAT-CAT-CAT-CGT-CAT-CAT-CAT-CDesign primers
358095TTGCTTGTTTTG-TTGCTTGTTTTG-TTGCTGTTTTTG-TTGCTGTTTTTG-TTGCTTGDesign primers
557389AGAAAAAGCAGATAAAGCAGAAAAAACADesign primers
596282AGATCCGGATCCAGTAAATCCAGATCCAGTTGATCCAGACCCAGTDesign primers
626099TTTGTATTAGTATTGGTATTTTTADesign primers
675547GACACCAAAAGATACACCAAAAAATACACCAAAAGADesign primers
702047TTCAGGAGC-CTCAGGAGC-CTCAGGAGC-TTCDesign primers
724907TT-TT-TT-CT-TT-TT-TT-GT-AT-TT-TT-TT-GT-GT-TT-TT-CT-TT-TT-CTDesign primers
957338AGAACAAAAACAACAACAAGAAAADesign primers
989624AAAAAGAAGAAGAAAACGAAACAGADesign primers
1113580TTTTTTTATTTTTTATCTTTTTTATDesign primers
1123424ATAAAAGAAATAAAACAAATACAAGAADesign primers
1126921TGCACATGTACATGTACATGCGCATDesign primers
1150547ACCCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTA-GATCCGGTADesign primers
1297931CCCAACGCCAAATCCAACACCAGATCCGACGCCAAATCCAACACCAACACCAACACCAGATCCAACACCGGACCCAADesign primers
1384545TTTTTTTTATTTTTCTTTCTTTTGTTDesign primers
1624342GCTGCTTCTTTTGCTGCTTCTTTCGCTGCTTTATTTGCTDesign primers
1849585CATCCGCATCGGCATCCGCATCGGCATCGGCDesign primers
1849617TCGGCA-TCAGCA-TCGGCA-TCGGCA-TCCGCA-TCAGCA-TCCGCA-TCDesign primers
1850042CGTCGGCATCGGCATCGGCGTCAGCDesign primers
1850088GGCGTCAGCATCCGCATCGGCGTCGGCATCAGCATCGGCGTCAGCATCCGCATCGGCGTCGGCATCCGCATCAGCGTCGGCATCAGCATCDesign primers
1850179GCATCC-GCATCA-GCATCA-GCATCA-GCDesign primers
1850206TCGGCA-TCAGCG-TCAGCG-TCAGCA-TCCGCA-TCGGCG-TCGGCA-TCAGCA-TCGGCG-TCGGCG-TCAGCA-TCCGCA-TCGGCG-TCAGCA-TCCGCG-TCAGCA-TCAGCA-TCAGCA-TCAGCA-TCAGCA-TCAGCA-TCAGCA-TCAGCG-TCAGCG-TCCGCA-TCAGCG-TCGGCA-TCGGCA-TCDesign primers
1850377GCATCCGCATCA-GCATCCGCATCA-GCATCAGCGTCC-GCATCAGCATCA-GCGTCCGCATCA-GCDesign primers
1850440TCGGCATCCGCATCAGCATCCGCATCGGCGTCCGCATCAGCATCGGCGTCDesign primers
1850491GCGTCC-GCATCG-GCGTCA-GCGTCA-GCATCC-GCATCA-GCATCA-GCGTCA-GCGTCC-GCATCA-GCATCA-GCATCA-GCDesign primers
1850566TCAGCG-TCCGCA-TCAGCG-TCGGCA-TCAGCA-TCAGCA-TCAGCDesign primers
1850608TCAGCGTCGGCATCAGCGTCAGCATCCGCATCGGCATCDesign primers
1850647GCATCA-GCATCC-GCATCC-GCATCA-GCDesign primers
1850680TCGGCGTCAGCATCCGCATCAGCATCGGCGTCAGCATCGGCGTCAGCGTCDesign primers
1850731GCATCA-GCGTCG-GCATCG-GCATCA-GCATCA-GCATCA-GCATCA-GCATCC-GCATCA-GCATCDesign primers
1850811GTCGGCATCAGCGTCAGCATCCGCATCGGCGTCAGCATCGGCATCGGCATCGGCGTCAGCATCGGCGTCAGCATCCGCATCAGCGTCGGCATCAGCATCAGCATCAGCGTCGGCATCCGCDesign primers
1850932TCCGCATCGGCGTCAGCATCCGCATCAGCGTCGGCATCCGCATCAGCGTCAGCATCCGCATCDesign primers
1850995GCATCGGCGTCGGCATCAGCGTCGGCATCAGCATCAGCDesign primers
1997120TCAGCTTTTTCAGCAGCAGCTTTCTCGGCAGCAGCTTTCTCGGCAGCAGCTTTGTCAGCCDesign primers
2082536TTTGTTTAATGTTTCTTCAATGTTTGTAAAATGDesign primers
2363275TTGCTTTTCCTTCTGCTTTTGCTTDesign primers
2370964CTTTTTCATCCTTTTTCCCCCTTTTTTATGDesign primers
2407113ATATTTTGTTGAATC-TAATTTTGTTGAATC-TAGTTTTGTTGAATCDesign primers
2431029CTCTTTTACTATTTTACTTTTTTADesign primers
2683192TTTGCTTTTGATTTGTTTTTTATTTACTTTTAADesign primers
2709788CAACAACACCAATAACAAAAACAADesign primers

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