Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Staphylococcus aureus subsp. aureus COL

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
60766	GATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGA	Design primers
61024	GATTCAGACAGCGACTCAGACGCAGATAGCGACTCAGATTCAGACAGCGATTCAGACGCAGATAGCGACTCAGA	Design primers
61099	GCAGATAGCGATTCAGACGCAGATAGCGACTCAGACGCAGATAGCGATTCAGAT	Design primers
61273	TCAGACGCAGATAGCGACTCAGACGCAGATAGCGATTCAGATTCAGACAGCGACTCAGA	Design primers
61366	GACTCAGACGCAGATAGC-GACTCAGACGCAGATAGC-GACTCAGATTCAGACAGC-GATTCAGACGCAGATAGC-GA	Design primers
61526	CAGACAGCGACTCAGACGCAGATAGCGACTCTGATGCGGACAGCGACTCAGACGCAGA	Design primers
107653	CGTTACCATCTTCTTTACCAGGTTTGTTGCCATCTTCTTTGCCAGGCTTGTTGCCGTCTTCTTTACCAGGTT	Design primers
107757	TCTTCTTTACCAGGTTTTTTGTTGTCTTCTTTACCAGGCTTGTTGCCGTCTTCTTTGCCAGGCTTGTTGTTGTCTTCTTTACCAGGCTTGTTGTTGTCTTCTTTGCCAGGCTTGTTATTGTCTTCTTTGCCAGGCTTGTTATTGTCTTC	Design primers
149971	AAAAATAAAAAAAGAAAGAAAAAAGA	Design primers
288171	TTAGTATTATTATTTGTATTATTAT	Design primers
309706	AAAAAAACTAAAAATACTTAAAAAACTA	Design primers
321980	AAAGAAATGAAAAAAGAAGATAAGAAA	Design primers
328576	ATTAGTTATTTGTTATTAGTAATT	Design primers
365179	GAT-ACA-GAA-GAA-GAA-AGA-GAA-GAA-GAA-AAA-GAA-GAA-GA	Design primers
475304	GA-TA-AA-AA-TA-AA-TA-TA-AA-GA-AA-AA	Design primers
479271	GG-AA-AA-TA-GC-AA-AA-TA-GA-AA-AA-TA	Design primers
481346	GAAGAAGATGAAGAAGTAGAAGAA	Design primers
634750	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACAGCGAC	Design primers
634826	CAGACTCAGATAGCGATTCAGATTCAGACAGCGACTCAGACTCAGACAGCGATTCAGACTCGGATAGCGACTCAGACTCAGATAGCGACTCAGATTCGGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGATTCGGACTCAGACAGTGATTCAGA	Design primers
635005	AGCGACTCAGATTCTGAC-AGCGATTCAGACTCAGAC-AGCGACTCAGACTCAGAC-AGTGATTCAGATTCAGAC-AGCGACTCAGATTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCAGAT-AGCGACTCAGACTCGGAT-AGCGATTCAGATTCAGAC-AGCGACTCAGATTCAGAT-AGCGA	Design primers
639156	ATCAGATAGCGACTCAGATTCGGACAGCGACTCAGATTCAGACAGAGACTCAGACTCAGATAGTGATTCAGACTCGGATAGCGATTCAGATTCAGACAGCGATTCAGATTCAGATAGCGATTCAGATTCAGACAGAGACTCAGA	Design primers
639304	GATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCAGACAGCGACTCAGACTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGACTCAGACAGCGACTCAGACTCAGATAGTGACTCAGATTCAGATAGCGA	Design primers
639478	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGATAGTGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGACTCAGATTCGGATAGCGACTCAGATTCAGACAGCGACTCAGACTCGGATAGTGATTCAGACTCAGATAGCGACTCAGACTCAGATAGCGATTCAGATTCAGATAGCGACTCAGACTCAGACAGCGATTCAGACTCAGACAGCGACTCAGACTCAGA	Design primers
643173	TGACTCAGACAGCGACTC-AGACTCAGACAGCGACTC-AGACTCAGACAGTGATTC-AGATTCAGACAGCGACTC-AGATTCAGATAGCGACTC	Design primers
643270	GACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGATAGCGATTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGCGACTCAGATTCAGATAGCGATTCGGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGATTCAGACAGCGATTCAGACTCAGATAGCGACTCAGACTCAGACAGTGATTCAGATTCAGACAGCGACTCAGACTCAGA	Design primers
643561	AGCGACTCAGATTCGGACAGCGACTCAGACTCAGATAGCGACTCAGACTCAGACAG	Design primers
695707	AA-TA-AA-AA-TA-AC-TA-TA-AA-CA-TA-AA	Design primers
737046	AAAATTAATATTAAAAATAAAAAT	Design primers
760168	ATAAAG-ACAAAG-ATAAAG-ATAAAG-A	Design primers
814858	AAATTTTTTTAAATTTGTTCAAGTTTTTCTAA	Design primers
882405	TAGTGGTTCAGATTCAGCGAGTGATTCAGATTCAGCAAGTGATTCAGACTCAGCGAGTGATTCAGATTCAGC	Design primers
882598	TCAGACAGTGACTCAGATTCAGATAGCGATTCAGATTCAGATAGCGATTCAGATTC	Design primers
882655	GACAGTGATTCCGACTCAGACAGCGATTCTGACTCCGACAGTGATTCCGACTCAGACAG	Design primers
882736	TCCGACTCAGATAGCGAT-TCCGACTCAGATAGCGAC-TCAGATTCAGACAGCGAT-TCAGATTCAGACAGCGAT-TCAGATTCAGATAGCGAT-TC	Design primers
882835	GACAGTGACTCAGATTCCGACAGTGACTCGGATTCAGATAGCGATTCAGATTCCGACAGTGACTCAGATTCCGACAGTGACTCAGACTCAGACAGTGATTCGGATTCAG	Design primers
882985	GACTCGGATTCAGATAGCGACTCAGACTCGGATAGCGACTCGGATTCAGATAGCGATTCGGACTCAGATAGCGA	Design primers
883060	TCAGAATCAGACAGCGAT-TCAGAATCAGACAGCGAT-TCAGATTCAGACAGCGAC-TCAGA	Design primers
883120	AGTGACTCAGATTCAGATAGTGACTCGGATTCAGCGAGTGATTCAGACTCAGGTAGTGACTC	Design primers
902878	AAAAGTATAAAAGTTTAAAAGAAT	Design primers
1063067	TCAGGGTTGTTAGGGTTGTCAGGGTTAT	Design primers
1069662	TAGGTGTTGGTGTAGGCGTAGGTTTAG	Design primers
1147516	CTTTAACTT-CTTTAACTT-CTTTAGCTT-CTTT	Design primers
1147980	ATAAAATTTAAAATAAAAAATATA	Design primers
1206637	AAGTTTTTCAAAGTTATTAAAAGTGTTTAA	Design primers
1274194	TA-TA-GA-AT-TA-TA-TA-AT-TA-TA-GA-AA-TA	Design primers
1285324	CAGAAGAAACAGAAGCAACAGAAGCAAC	Design primers
1387891	CTGCTTCTTCTTCGGCTTCTTCTT	Design primers
1435137	ATTTTTTGTCTTCAGACTTTTTATCATCAGATTTCTTGTCGTCTGATTTTT	Design primers
1567844	TT-TT-GT-TT-CT-GT-AT-TT-GT-TT-CT-GT-AT-TT-GT	Design primers
1762914	TTCTTTTTTTATCTTTTCTATTCTTTT	Design primers
1894864	TT-TT-TT-CT-TT-CT-TT-TT-TT-AT-TT-TT-CT	Design primers
1939568	ATTATATTATAATATTATTATTTTATT	Design primers
2002482	ACAATTTAATAAACTTTAATAGAATTTTATA	Design primers
2058715	ATATATACAATATACACAATATACACA	Design primers
2079654	TTTGGATTCGGATTTGGCTTTGGTTT	Design primers
2079681	TCTGGATCTGGTTTTGGATCCGGAT	Design primers
2079759	TCTGGATCTGGTTTTGGATCCGGAT	Design primers
2250667	CATGTATCTTGATGCATCTTCAGGTATTTT	Design primers
2351578	ACAATAACTATAACAATTACAACAAC	Design primers
2369621	TAATATATCAATATATTGATATATTA	Design primers
2426408	TTATTATTCGCTTGGTTATTACTTGATTGGTTATTATTTGTTTGGTT	Design primers
2440526	TTTAAATTAATTTTATGTAATATAA	Design primers
2645362	TATTTTAAATTTTATATTTTTTATTTTTT	Design primers
2711257	TGAATCGGAGTCACTATCTGAGTCTGAGTCGCTATCTGAATCCGAGTCGCTATC	Design primers
2711312	GAGTCTGAGTCGCTATCTGAGTCTGAATCGCTGTCTGAGTCTGAGTCGCTATCCGAGTCTGAGTCGCTGTCTGA	Design primers
2711405	TCCGAATCGCTATCTGAATCTGAATCGCTATCCGAGTCTGAGTCGCTGTCTGAATCTGAATCGCTGTCTGAGTCCGAATCGCTATCTGAATC	Design primers
2711498	GAGTCGCTGTCTGAGTCTGAATCGCTATCTGAATCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAGTCTGAGTCGCTGTCTGAGTCTGAATCGCTATCTGAATCTGAGTCGCTGTCTGAGTCTGAGTCGCTATCTGAGTCTGAGTCGCTGTCTGAATCTGAGTCGCTGTCTGAATCTGAATCGCTATCTGAGTCTGAATCGCTATCTGAGTCTGAATCACTGTCTGAGTCCGAGTCACTGTCTGAATCTGA	Design primers
2711783	TCTGAGTCGCTGTCTGAA-TCTGAATCACTGTCTGAA-TCCGAATCGCTATCTGAA-TCTGAATCGCTATCTGAA-TCTGAATCGCTATCTGAA-TCTGAGTCGCTATCTGAT-TCTGAATCGCTATCTGAT-TCTGAGTCGCTGTCTGAA-TCTGAATCACTGTCTGAA-TC	Design primers
2711951	TCGCTATCTGATTCTGAGTCGCTATCTGAACCTGAGTCGCTGTCTGAGCCTGAGTC	Design primers
2736591	TGGATCTTCCGATGTATCTTTCGATGCATCTTTCGAT	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

60766

GATTCAGATGCGGACAGCGATTCAGACGCAGATAGCGATTCTGATGCAGACAGCGA