Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida KT2440

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
109995ACGACCACGCCCACGGCCACGACCADesign primers
250894CGGCGCTGGCGGCGCGGGCGCCGCTGGDesign primers
343324CGCTGGCGCTGTCGCCGGCACTGGCDesign primers
674620GGCCACCCCAGTAGCCGCCCCAGTAGCCACCCCAGCDesign primers
986702CCGGCACCAGCACCTGCACCTGCACCGGCCDesign primers
1006008ACAACGGCAACGACATCGACGACGDesign primers
1186579TGGACATGCCGCTGGACGTGCTGCTGGGCAAGCCGCDesign primers
1193416CGGCTCGGTGACTGGCGGTTCGGTCACCGGTGGCTCGGTGACCGGDesign primers
1238016GTTCAGGTGCAGGTTGAGGTTCTGGDesign primers
1360033GTTCAGCCGGGGTTCAGCCAGGGTTCAGTCGCGGTTCAGDesign primers
1367588AGATGG-CGGTGG-CGGTGG-CGGTGG-CGGTGG-CGGTGGDesign primers
1367634GGT-GGC-GGT-GGA-AGT-GGC-GGC-GGC-GGT-GGCDesign primers
1370618AAGGTCGAG-AAGCCCGAG-AAAGTCGAG-AAGGTCGAG-AAGGTCGAG-AAGGTCGAG-AAGGTCGAG-AAGGTCGAG-AAGGTCGAG-AAGGTCGAG-AADesign primers
1370711GTCGAGAAA-GTCGAGAAA-GTCGAAAAA-GTCGAAAAA-GTCGAAAAA-GTCGADesign primers
1370772GGGTCGAAA-AGGTCGAAA-AGGTCGAAA-AGGTCGAAADesign primers
1397443AAGGCTGCCGAGGCCAAGAAAGCTGCCGAAGCCAAGAAGGCCGACGAGGCGAAGAADesign primers
1397614GCCGAGGACGCCAAGAAAAAGGCAGCCGAAGAGGCCAAGAAGAAAGCAGCCGAGGACGCCAAGAAGAAAGCGGCDesign primers
1421789GCACCGACACCGACACCGGCACCTGCTCCGGCDesign primers
1484699GCTGGCGCTGACCCTGGCGCTGACDesign primers
1522380TGCTGGTACTGGTGCTGGTGCCGGDesign primers
1528828AACAGC-AACAGC-AGCAGC-AACAGCDesign primers
1551201ATGGGTGGC-ATGGGTGGC-ATGGGCGGC-ATGDesign primers
1719286GTAGAAG-GCAGAAG-GCAGAAG-GCAGAAG-GCAGAAGDesign primers
1732521GTCCAGGGCGGCCAGGGCGTCCAGGGTDesign primers
1738036ACTCCCCAAAACCTCCCCAATATCTCCCAAAAADesign primers
1802405GGTGGTGGTGCTGGTGGAGGAGGTGDesign primers
1838366GGCAACAGCAACAGCAACGGCACCDesign primers
1903569CAGGCAACC-CAGGCAACC-CACGCAACC-CDesign primers
2085304AGCTTCTGCTCCAGCTTCTGCTTCTGCTTCTGCTTCTGCTTCTGCTCTDesign primers
2087578GTTGCT-CTTGCT-CTTGCT-CTTGCTDesign primers
2087915CACAACCC-AAAAGCCC-AAAAGCCC-AAAAGCCC-AAAAGCCC-AAAAGCCCDesign primers
2148252GCACGTTCTTCGCGAGGGGCGCGTTCTTCACGTGGGGCCCGTTCTTCACGTGGGGCACGDesign primers
2148330TCTTCACGTGGAGCACGCTCTTCACGCGGTGCGCGCTCTTCACGTGGCGCTCGCTCTTCDesign primers
2148519GGCGCACGTTCTTCACGCGGTGCACGCTCTTCACGTGGGGCACGTTCCTCGCGCGGDesign primers
2166719CGTAGGG-AGTAGGG-AGTAGGG-AGTAGGG-AGTAGGGDesign primers
2256420CCAAGAA-GCAAGAA-GCAAGAA-GCAAGAA-GCAAGAADesign primers
2258171CGAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGA-TCAAGADesign primers
2284327GATCGAGTTCGAGATCTACATCGADesign primers
2296705GCCAGG-CCCAGG-GCCAGG-GCCAGC-GDesign primers
2392012CGGCCCTGGCGCGGGCGCTGGCGCCGGCGCTGGCGCCGGDesign primers
2412746TTCTGC-TTCTGC-GTCTGC-GTCTGC-TTCTGC-TTTTGC-TDesign primers
2414534CCAAGAA-GCAAGAA-GCAAGAA-GCAAGAADesign primers
2414847GCGAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAGDesign primers
2414902TCAAGA-TCAAGA-TCGAGA-TCAAGA-TCAAGA-TCGAGA-TCAAGADesign primers
2478401GGGTGGTGGTGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGDesign primers
2488079AGGCCC-AGGCCC-AGGCTC-CGGCCCDesign primers
2530806GCGAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAG-ATCAAGDesign primers
2530861TCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACG-GCAACGDesign primers
2742837CAAGCCGGCCAAGCCCGCCAAGCCAGCDesign primers
2837055TACTCGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTG-GCATGGTGDesign primers
2837152CATGGTGG-CATGGTGG-AATGGTGG-CATGDesign primers
3029248AGCAGGGGCAGGAGCTGGAGCAGGDesign primers
3041710AGCGGCGTGGCGGCGTAGCGGGGTDesign primers
3060954TTGGCCTCCTGCAGGTTGGCATCCCCCAGGTTGGCCTCTTGCAGGTDesign primers
3182313AGACAAGAACACACAAGGACAGCCATGAACDesign primers
3223878CATTGG-CCTTGG-CCTTGG-CGTTGGDesign primers
3243406GCCAGCGCCAGGGCCCGCGCAAGCGDesign primers
3453917GTCAGCTC-TTCAGCTC-TTCAGCTC-TTCAGCTCDesign primers
3811923TGCTGCTGCTGTTGATGCTGCTGTDesign primers
3818889GGCTACGGCAACGGCTATGGCTCCDesign primers
4022195CTGCTTTTGATC-TGGCTTTTGATC-TGGCTTTTGATCDesign primers
4022537GCATCTT-GCTTCTT-GCTTCTT-GCTTCTT-GCTTCTT-GDesign primers
4022903GAAGCG-AGAGCG-AGAGCG-AGAGCG-AGAGCG-AGAGCGDesign primers
4069404GATGATGCCGATGATGGCGATCATGCCDesign primers
4137091GCACCA-GCACCA-GCAGCA-GCGCCA-GDesign primers
4143612GGCAAG-GGCAAG-GACAAG-GCCAAG-GGCDesign primers
4221194CAACCT-CAGCCT-CAGCCT-CAGCCT-CAADesign primers
4233460AAAGCA-GGAGCA-GGAGCA-GGAGCA-GGAGCA-GGAGCA-GGAGCA-GGAGCADesign primers
4394318CACGGCCAGGGCCTCGGCCACGTCCDesign primers
4607035GCAGCCGCACCCGCACCCGCAGCAGCADesign primers
4754423GCCAGCGCCACCGCCGGCGCCACCGGCAGCDesign primers
4808230AACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCDesign primers
4812597GGT-GGT-TGT-GGT-GGT-AGT-GGT-GGTDesign primers
4880427CCGGCCCAGGCCGCTGCCCAGGCCGCTGCCCAGGCCDesign primers
4907896CGTTGC-CGTTGC-CGTTGC-CGTTGC-CGTTGADesign primers
4907927CTTGAT-CTTGAT-CTTGAT-CTTGAT-CTTGAT-CTTGAT-CTTGAT-CTTDesign primers
4909688GCATCTT-GCTTCTT-GCTTCTT-GCTTCTT-GDesign primers
4910029ACAAGC-AAAAGC-AGAAGC-AGAAGC-AGAAGC-ADesign primers
4957387CTCGGGCTCAGGCTCAGGCTCCGGTTCGGGCTCCGGDesign primers
5081665GGCCAGCGCCAGGGCCTGGTCCAGGGCDesign primers
5320586GGCCCTGTACTGATCGGCCCTGGCGTGATCGGCGAGGTACTGATCGGCDesign primers
5389879GGCAGCGGTAGCAGCAGCGGCGGCGDesign primers
5426898TTCGGCTTCTTGGGCTTCTTCGGTTTCTTDesign primers
5544502GACGCTCGCGACGCTCACGGCGCTCGCDesign primers
5704757CGCTGCAGGCTTGGCTGCTGGCTTAGCTGCAGGTTTDesign primers
5793342AGCTGCAAGCTACACGCTGCAAGCCGCAAGDesign primers
5858395GGCGGCGGGGGCGGCAGCGGGGGCDesign primers
5961872CGCGAGCGCGTGGGCGAGCGCGACCDesign primers
6036183CGACGGTGACGGCGACCGCGTCGGCGDesign primers
6055313GCCCAAGCCGAAGGCCAAGCCCCAGCCDesign primers
6132591CATGTTGCCGTGGTCCATCCCAGCCATTTTGCTGTGGTCCATGCCGGCCATGTTGCCGTGGTCCATCCCAGCCATTTTGCTGTGGTCCATACCGGCCATGTTGCCGTGGTCCATGCCGGCCATGDesign primers

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