Microsatellites /Tandem Repeats database

Genome: Pseudomonas putida KT2440

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
1367591TGGCGG-TGGCGG-TGGCGG-TGGCGG-TGGCGG-TGGCGG-TGGCDesign primers
1370639GTCGAGAAG-GTCGAGAAG-GTCGAGAAG-GTCGAGAAG-GTCGAGAAG-GTCGAGAAG-GTCGAGAAG-GTCGAGAADesign primers
1370726AAAGTCGAA-AAAGTCGAA-AAAGTCGAA-AAAGTCGAA-AADesign primers
1370773GGTCGAAAA-GGTCGAAAA-GGTCGAAAA-GGTCGAAAA-GGTCGADesign primers
1719288AGAAGGC-AGAAGGC-AGAAGGC-AGAAGGC-AGAAGDesign primers
2085317GCTTCT-GCTTCT-GCTTCT-GCTTCT-GCTTCT-GCTDesign primers
2087920CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAAAG-CCCAAADesign primers
2166720GTAGGGA-GTAGGGA-GTAGGGA-GTAGGGA-GTAGGGDesign primers
2256421CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAADesign primers
2258173AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AADesign primers
2414535CAAGAAG-CAAGAAG-CAAGAAG-CAAGAAG-CAADesign primers
2414850AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATCDesign primers
2478402GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGT-GGDesign primers
2530809AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AAGATC-AADesign primers
2530866GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAAC-GGCAACDesign primers
2837060GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGCATG-GTGGDesign primers
3453918TCAGCTCT-TCAGCTCT-TCAGCTCT-TCAGCTCTDesign primers
4022225TTGATC-TTGATC-TTGATC-TTGATC-TTDesign primers
4022540TCTTGCT-TCTTGCT-TCTTGCT-TCTTGCT-TCTTGDesign primers
4022905AGCGAG-AGCGAG-AGCGAG-AGCGAG-AGCGAG-AGCGAG-AGCDesign primers
4233462AGCAGG-AGCAGG-AGCAGG-AGCAGG-AGCAGG-AGCAGG-AGCAGG-AGCAGDesign primers
4907897GTTGCC-GTTGCC-GTTGCC-GTTGCC-GTTGDesign primers
4907926TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTGA-TCTTDesign primers
4909691TCTTGCT-TCTTGCT-TCTTGCT-TCTTGDesign primers
4910037AAGCAG-AAGCAG-AAGCAG-AAGCAGDesign primers

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