Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Bordetella bronchiseptica

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
69521	GC-CG-CG-AG-CG-AC-CG-CG-CG-CG-GG-CG-CG-CG-CG	Design primers
74728	CCGCCCCGCAGCGCCCCGCGCCGCA	Design primers
176172	GCTGGCCGGCTGGCTGGCCGGCCG	Design primers
192114	CGATCA-CGATCA-TGATCA-TGATCA	Design primers
195228	ACGACCACGGCCACGGCCACGACGA	Design primers
215845	TCGCGCTGGGGACGGTCGCCGAAGCTGCGCTGCGGGCGGTCGCCGAAGTCGCGTTGCGGACGGTCACCGATGTCGCGCTGGGGACGGTCACCGAAATCGCGCTGGGGACGATCACCGAAGCTGCGCTGCGGACGATCGCCGAAGTCGCGCTGCGGACGGTCGCCGTAGGGGCGCTGGGGACGGTCGCCGAAATCGCGTTGCGGACGGTCGCCGTAA	Design primers
234805	CAGGATCAGGAACGGGATCAGGAT	Design primers
250183	GGCGC-AGCGC-GCCGC-GCCGC-AGCGC	Design primers
263964	CGCGGCGCAGCCCGGCGCGCCGCAG	Design primers
281270	ACGGCCGCGCGCACGCCCGGGCGCAGCGCCGCGCGCA	Design primers
292064	GGGGCGATGGGGGCGGTGGGGGCGATC	Design primers
359210	CGGCGCCGTCGCCGGCGCCGGCGACGGCGTCG	Design primers
432803	CCA-CCG-CCG-CCG-CCT-CCG-CCG-CCG-CCT-CCG-C	Design primers
433295	CGGCGCGCCGCTGCGCGGCGCGGTGC	Design primers
466110	CGGCGCTGGCGCAGGCGCCGTCGC	Design primers
534634	CGGGGCGGGGCGGGGCGGCTCGGCGCGCGG	Design primers
708448	GGGCGCGCGAGGGCGCGCCGGAGCCCGCGA	Design primers
709073	GAGCTGGGGCTGGCGCTGGACCTG	Design primers
724918	GCGCTGGGGCTGGTGCTGGCGTTG	Design primers
784946	CCGCGCCGATGGCCGCGCCGTTGACGGCGGCGATGG	Design primers
817273	GGGCGGCCGGCCGGCCGGGCGGCGGGG	Design primers
820830	GCGCGCGGCGCGTGGCGCGCGGCGC	Design primers
823629	TGC-TGC-TGC-CGC-CGC-TGC-TGC-CGC-TGC-CGC	Design primers
837983	GGCGGCGGCGGCGGGGGCGGCGGCG	Design primers
856904	CCGAGG-CCGAGG-CCGCGG-CCGAGC-C	Design primers
861812	GCCCGCGCCCGAACCCGCGCCCGAGCC	Design primers
863568	GTGCGGCGCGGGGCGGTCCGGCGCGG	Design primers
890519	GCCAAGGACAAGGGCAAG-GACAAGGACAAGGGCAAG-GACAAGGGCAAGGACAAG-GACAAGGGCAAGGACAAG-GGCAAGGACAAGGGCAAG-G	Design primers
964114	TCGCCGTCACCGTGGCCGGCGCCG	Design primers
964502	GCTGCTGCCGCTGCTGGTGCTGCC	Design primers
1000725	GGCCCAGGCGCAGGCGCAGGCCGA	Design primers
1019509	CCCCAGCCCGAGCCGCAGCCCGAGCCGCAGCC	Design primers
1027783	GCGCGGCCCGGCGCCGCGCGGGGCG	Design primers
1029511	GAA-GAA-GAC-GAC-GAA-GAC-GAA-GAC-GAC-GA	Design primers
1039395	GTCCATGCC-GCCCATGCC-GCCCATGCC-G	Design primers
1077566	CATCAGCGTCAGCATCTGCAGCAGC	Design primers
1090793	CGGGGAAGGGGCGGGGAAGGAATGGGGCAGGGG	Design primers
1183356	GGCGGCGCGGGCCGGGGCCGGGCGCG	Design primers
1223427	GC-GC-GC-CG-GC-GC-GA-CC-CG-GC-GC-GC-GC-GA-GC-G	Design primers
1223857	TGGCGGTGCTGGCGCTGCTCGCGGTGC	Design primers
1263023	GGCATC-GCCATC-GGCACC-GGCACC-GACATC-GCCATC-G	Design primers
1293321	CCGCGCCCGCGTCCGAGCCCGCGCC	Design primers
1316494	GCT-GCT-GGT-GCT-GGT-GCT-GGT-GCT-GC	Design primers
1319314	GCGGCAGCGCGTGGCCGCGCGCGGCGGCGG	Design primers
1368319	GCGCCCGCGCGCGCGCCGGCGCCG	Design primers
1398905	GGCGCGGCCCGGCTCGACGCAGCGC	Design primers
1419737	CGCCCG-CACCCG-CACCCG-CACCCG-CGC	Design primers
1425052	TGCTGGTGCTGCTGCCGGTGCTGATG	Design primers
1441157	CGGCCGCGCCCGCGGCGGCGGCCG	Design primers
1461407	GGCGCTGGG-CGCGCTGGG-CGCGCTGGG	Design primers
1462144	CTGCCGGCGGTGCGGTTCCAGGCGGTGCGGTTCCCGGCGGTGCCG	Design primers
1463100	CCCCAGCCG-CCGCAGCCG-CCGCAGCCG-CC	Design primers
1472234	GGC-GCC-GGC-GGC-GGC-GCC-GCC-GCC-GGC	Design primers
1494339	CTGGCCCTGGGCCTGGCGCTGGCC	Design primers
1525441	GGAGGCGGTCTTGGCGGGGGCTTTCTTGGCCGAGGCCTTCTTGGC	Design primers
1535755	AGCCCGCGCCCGAGCCTGAACCCGAGCCTGAACCCGAGCCTGAGCCAG	Design primers
1539575	TCGGCGTGGGCGCCGGCGCCGGCG	Design primers
1596405	GCCAGCGCCGCCACCGCCGCCAGCGCC	Design primers
1641397	CACAGACGCAGACCCAGACACAGCC	Design primers
1658180	GTTGCGGCCAGCGTGGCCGCCAGCGTGGCGGCCAGGG	Design primers
1693418	GCCAGCGCCGGCGCCAGGCCCAGCG	Design primers
1693609	CGCCAGCCCCAGCGCCACCGCCAGC	Design primers
1726413	ATTCAGACTCAGGTTCAGATTCAG	Design primers
1727402	GGCCCTGGCGCTCGCCCTGGCGCTG	Design primers
1744851	GCGCTGGCCCTGGCGCTGGCGCTGGCGTTGG	Design primers
1767060	CCGACGCCGGCGCCGATGACGACG	Design primers
1779318	AAATTCGCACCCCCGCAGGATTTGCACCCCCGCAGCATTCGCACCCCCGCAAATTCCGCACCCCCGCA	Design primers
1810693	CGCTGGCGCCGAGCGGGCGCCGCGCTGGCGCTG	Design primers
1917317	GTGCTG-GTGCTG-CTGCTG-GCGCTG-GTG	Design primers
1922219	GCC-GCC-GCC-GGC-GCC-GCC-GGC-GCC	Design primers
1928423	TGCTGATGCTGGCGCTGATGCTGG	Design primers
1936771	TCCGGCCAGCCCGGC-GCCGGCCAGCCCGGC-GCCGGCCAGCCCGGC	Design primers
1936856	CCGGCCGCGCCCGCCGCCGCGCCCGCCGCCGCGCCC	Design primers
1961473	GGCGCT-GGCCCT-GGCGCT-GGCGGT-GGC	Design primers
1987030	TCG-CCG-TCG-GCG-CCG-CCG-GCG-CCG	Design primers
2037589	GCCGCGACCGCGACCGCGGCCGAG	Design primers
2078355	CGCCCAGGCGCGCCCGCGCGCGCTCGGGCG	Design primers
2118655	CGAGCC-CGAGCC-CGAACC-CGAGCC	Design primers
2118706	GCCCAA-GCCCAA-GCCGAA-ACCCAA	Design primers
2122995	GTGGCGCTGGTGGTGCTGGTTGCGCTG	Design primers
2179498	AG-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC	Design primers
2185351	TGGCCCTGGCGCTGGCCGTGGCAC	Design primers
2186664	AAGCAGTACCAATAAGCAGTACCCATGAGCAGCACCAATAAG	Design primers
2187501	CGCCGCCGCCTCCGACGCCGCCGC	Design primers
2222483	CCGCCGTCCGCCATCCGCCGCCCG	Design primers
2233419	AGGCGC-TGGCGC-TGGCGC-AGGCGC-AG	Design primers
2244778	GCGGCCGCGGGCGCGGCGGCGGCC	Design primers
2254955	CGGCGGCGGCCGGGGCGGCGGCGG	Design primers
2273705	CCGAGGCCGCGGCCAAGGCCAAGG	Design primers
2275936	TGC-TGC-TGC-TGG-TGG-TGC-TGC-TGC-T	Design primers
2283657	CCCGGCGCCGATGGCAAGGCCGGCGCTGACGGCAAGCCAGGCGCCGACGGCAGGCCAGGCGCCGACGGCAAACCCGGGGCCGACGGCAAACC	Design primers
2288103	GGGGCGATGGGGGCGGTGGGGGCGATC	Design primers
2289637	GGCTTTT-TGCTTTT-TGCTTTT-GGC	Design primers
2293073	GCGCCAGCGCCGCCGCCAGCGCAAG	Design primers
2294916	CGT-CGT-CGT-CCT-CGT-CCT-CGT-CGT-C	Design primers
2331089	CCGCGCGACGCGCGCCGCGTGCCG	Design primers
2349602	GTGACGTCACGC-GTAACGTCACGC-GTAACGTAACGC-GTGACG	Design primers
2380572	CAAGGGCCCAAGGGGCCAAGCGCC	Design primers
2400167	CAGCCTGGCCCC-CAGCCTGGCCCC-CAGCCTGGAGCC-C	Design primers
2441616	GCGGTGGCGGCGGCGGTCGCGCTG	Design primers
2467586	GGCGGCGCGGCCGGCGCGGGCCGCGCGG	Design primers
2469810	GGTGCTGCTGGCCGGGCTGCTGGCGGCGCGGCTGGCG	Design primers
2475674	CCAGCCGGGCGGCCAGCCTGGCAGCCAGCCCGGCGG	Design primers
2477016	GGCTCG-GCCTCG-GCCTCG-GGCTCG	Design primers
2478129	GCGTGGGCGCGGCCGTGGGCGTGGGCG	Design primers
2538019	CGCGGCCGTGGCCGCGGGCGCGTC	Design primers
2557096	CCA-GCA-GCA-GCA-CCA-TCA-GCA-GCA	Design primers
2559479	AGCAGGGGCAGGATCAGGGGCAGG	Design primers
2591807	GCGGCGCGGCAGCGCGGCGGCGCG	Design primers
2658724	GGCATGGTCGTGCCCGGCATGGTCATGGCCTGCGTGGTCGTGGCCTGCGTGGTCGTGGCCG	Design primers
2677976	CCTGTCCCCGCGGGGACAGGCACCTCTGCCGCAGCGGGGACAGGCACCCTTGCCGCAGCGGGGACAGGCACCCCTG	Design primers
2699401	CGCGCCCAAGGCCGAGGCCCCCAAGACCGAGGCGCCGAAGGCGGA	Design primers
2707585	CGGCGGCCGCGGCGCCGGCGCCGG	Design primers
2723743	GGCCTGCGCCTGGACCTGGGCCTGG	Design primers
2734897	CGCC-GGCC-CGCC-CGCC-GGCC-GGCC	Design primers
2736856	CGCC-GGCC-CGCC-CGCC-GGCC-GGCC	Design primers
2746309	GTTGCGGCGGTTTCGGCGGTTTCGGCGG	Design primers
2746452	GGCGGCCGG-CGCGGCCGG-CGCGGCCGG	Design primers
2746646	TGGCGGCGT-CGGCGGCGT-CGGCGGCGT	Design primers
2760705	CCTGGT-GCTGGT-GCTGGT-GCTGGT	Design primers
2787973	TGGCGCTGCTGGGGCTGCTGGCGCTGC	Design primers
2858591	GGCGCGCCGGCGCGCGGGCGCACC	Design primers
2876581	CGGCCAGCCCCACGGCCAGCATCACCGCCAGCCCCGC	Design primers
2900092	CTGGCGGCCGGCGGCTGGTGGCTGG	Design primers
2906561	CGG-CGG-TGG-CGG-TGG-CGG-CGG-CGG	Design primers
2928594	GCGCCTGGCGCCGGGCACCTGGCGC	Design primers
2964565	CCGCCGCCGCGGCCGCCGCCACCG	Design primers
3048964	CCCGCATCGCCGCCGCCGGCATGACCGCCGCCCATATCGCCGGCG	Design primers
3066179	CCGCCGCCTCCGCCGCCCGCGCCGCCGCCG	Design primers
3076179	TCGCCAGCGCCAACGCCAGCGCCATC	Design primers
3108418	GGCGCGCCACAGCGCGCCGCGGCGCGTCAG	Design primers
3185028	GGCCTT-GGGCTT-GGGCTT-GGGCTT	Design primers
3185053	GGTGCG-GGCGCG-GGCGCG-GGCGCG-GGCGCG-GGCGCG-GG	Design primers
3209293	TGCTGGTGCTGACGCTGGTGCTGC	Design primers
3220357	CACGCCCACGTCCAGGCCGACGCC	Design primers
3242252	TGCGCCTGCTCCAGCGCCAGCGCC	Design primers
3243336	GGCGCCAGGCATCTGGCCGCTGGGCATCTGGCCGCTGGGCATCTGG	Design primers
3252382	GCGGCCTGC-TCGGCCTGC-TCGGCCTGC	Design primers
3257408	CTGGGCATCCTCGGCATCCTGGCCATC	Design primers
3257850	CCGCGCCGCCGGCGCCGCCCGCGCCCCCCGCCCCGCC	Design primers
3303401	GCGCTG-GCGCTG-GGGCTG-GCCCTG-GCGCTG-GC	Design primers
3327474	GCGCGCGCCCGCGCGCGTGCGCGG	Design primers
3337667	TGGCAATCGGCGTGGCGATCGGTGTGGCCATCGGCGTGGC	Design primers
3345224	CGCCGGCGACGGCGCCAGCGCCCGCG	Design primers
3465833	CGCGG-CGCGG-CGCTG-CTCGG-CGCCG	Design primers
3480169	GCCTCGTCGGCGCCGGCTTCGCCGGCGGCGGCCGCGTCGCCGCGG	Design primers
3480892	CCTCGACCGCATCGACCGCCTCGACCA	Design primers
3481705	CGACAAGAGCGGCGACAACAGCTGCAACAACAGCGGCG	Design primers
3493062	CGATGTCGCTGTCGGTGTCGGTGT	Design primers
3523012	CGGCGGCGCTTCGGGCGGGGCTTCGGGCGGCGCTTC	Design primers
3531232	CCAGCGCCAGCATCAGCGCCACCG	Design primers
3541904	GGT-GGC-GGA-GGC-GGC-GGC-GGT-GGC-GGC-GGC	Design primers
3543539	GCCCAGGGCGCCCAGCGCGCCCAGCGC	Design primers
3563961	CGCCGACGCCGGCGCCTACGCCGGC	Design primers
3604840	CCGCCAAGGCTCCTGCCAAGACTCCTGCCAAGGCTCCCGCCAAG	Design primers
3665322	CCGCCAGCGCCACGGCCACCGCCG	Design primers
3701727	ACCGCCACCACCTCCGCCACCGCG	Design primers
3749983	CGTCACGCGTTACGTTACGCGTGACGTTACGCGTGACGTCAC	Design primers
3789474	CGAGGTCGAGTTCGTGGTCGAGGA	Design primers
3805254	GGGCACCTGGGCACCCGGGCCCCTG	Design primers
3846203	GTGGCGGTGCCGGTGACGGTGGCCGTGCCGGTGGCCG	Design primers
3921198	TCTTGTTTTTC-CCTTGCTTTTC-GCTTGCTTTTC-GCTTGCTTTTC	Design primers
3944473	CGGCGGCCGCGGCGGCCGCGCCGG	Design primers
3950288	CGCCAGCGACAGCCCCAGCGCCAGC	Design primers
3992757	CCGCCCCGGTGGAAA-CGGCTCCGGTCGAAA-CGGCTCCGGTCGAAA-CGGCTCCGGTCGAAA-CGGCCCCGGTCGAAA-C	Design primers
4124651	CGGGGCCCTGCGGGACCCGGCGTGGCCGTG	Design primers
4149805	ACCGCGGCCATCGCGGCCACCGCGGCCA	Design primers
4168124	CAGCGCGGCGCCGGCGCGCCGCCAGCTCGACGCC	Design primers
4205617	GCCGCGGTCGCGGCAGCGGCCGCC	Design primers
4217520	CGA-CGA-CGA-TGA-CGA-CGA-TGA-CGA	Design primers
4256362	CG-CG-CG-CG-GG-CG-CC-CG-CG-CG-CG-AG-C	Design primers
4277700	ACCAGCAGCAGCGCCAGCACCAGC	Design primers
4296311	CGCCAACTGCTGCCAAATGCCGCCAACTGGC	Design primers
4342206	GCGCTGGCCCTGCCGCTGGCGCCGGC	Design primers
4369071	GCGCCGATGCCGGCGCCGATCGCGGCGCCCTTGCCG	Design primers
4406018	ACTGCAAA-ACTGCAAA-ACTACAAA-A	Design primers
4479691	CGGCCCCTGC-CGCACCCTGC-CGCACCCTGC-CGCACCCTGC-CG	Design primers
4479734	ATCCTGCCGC-ATCCTGCCGC-ATCCTGCCGC-ATCCTGCTTC	Design primers
4510521	AGCCGGAACCGCAGCCGGAACCTGAACCGCAACCGCAGCC	Design primers
4510807	CGAGAAAGCCGCGGCGGAGAAGGCCGCCGCCGAAAAGGCCGCAGCCGAGAA	Design primers
4510886	GAGGCCGCCAAGAAGGCCGAGGCCGAGAAGAAAGCCGAGGCCGAGAAGAAAGCCGAGGCCG	Design primers
4510966	GGCGGCCAAGAAGGCGGCCGCCGAGAAAGCCGCTGCCGAGAAGGCGGC	Design primers
4514723	GCGCTGGCCCTGCCGCTGGCGCTG	Design primers
4564141	TCGACC-TCGACC-TCGATC-TTGACC	Design primers
4572515	GCGCGACGCGGCGGGCCGCGCCGCG	Design primers
4603689	TCACCGCGTCGATGATCAGCGCGTTGGTGATCACCGTGTCGACGC	Design primers
4666670	AGGTCGCCAAGAAAGCGGTAGCCAAGAAGGCCGTCGCCAAGAAAC	Design primers
4666729	GTCGCCAAGAAGGCTGTAGCCAAGAAGGCCGTGGCGAAGAAAGCTGTCGCCAAGAAAGCCGTAGCCAAGAAGGCCGTGGCCAAGAAAGCGGTAGCCAAGAAGGCCGTCGCCAAGAAGGCG	Design primers
4666851	TGCCAAGAAAGCCGTCGCGAAGAAAGCCGTAGCCAAGAAGGCTGTAGCCAAGAAAGCCGTCGCCAAGAAAGCCGTAGCCAAGAAGGCCGT	Design primers
4666942	GCCAAGAAGGCGCCTGCCAAGAAGGCTGCTGCCAAGAAGGCGCCTGCCAAGAAGGCTGCCGC	Design primers
4667010	GAAGCCTGCCGCCAAGAAGCCCGCCGCGAAAAAGCCGGCTGCCAAGAAGGCTGCGCCCAAGAAGCC	Design primers
4680082	CCACCGCCATCGCCACCACCATCG	Design primers
4740319	TGGCGC-TGGCGC-TGGCCC-TGCCGC-TG	Design primers
4761250	GGCCAC-GGCCAC-CGCCAC-GGCCAG	Design primers
4794314	CAGCGCCAGGGCCAGCGCCAGCGC	Design primers
4810836	GCGGCGCGGCGGCGCCGCGGCCCGG	Design primers
4878473	CCGTGCCCGCCGCCATGGCCGCCGCCGTGCGCGCCG	Design primers
4882036	GCGGCGGGGCGCGGCGGTACTCGACGGGGC	Design primers
4988215	GCCAGCCCCAGCTCCAGCGCCAGG	Design primers
5004354	GCGGCGGCTGCGGCGCCGGCGCCGGCGGCG	Design primers
5062352	GCGGTGGCGGAGGTGGTGGCGGTT	Design primers
5063935	ACAGGCACCCCACGCACCCCACGCACCCCGCGCACCCCACGCACCCCACGCCCC	Design primers
5084667	GCCCAGCC-GGCCAGCC-GGCCAGCC-G	Design primers
5221574	CCGCCGCTGCCGCCGCCTCCGCCACC	Design primers
5311199	GCCGGC-GCCGGC-GCCGGC-GCCGGC-G	Design primers
5321574	GGCGGCGGCGCCAGCGGCGACGGC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

69521

GC-CG-CG-AG-CG-AC-CG-CG-CG-CG-GG-CG-CG-CG-CG