Microsatellites /Tandem Repeats database

Genome: Bordetella bronchiseptica

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
890533CAAGGA-CAAGGA-CAAGGG-CAAGGA-CAAGGG-CAAGGA-CAAGGA-CAAGGG-CAAGGA-CAAGGG-CAAGGA-CAAGGG-CAAGGA-CDesign primers
1039397CCATGCCGC-CCATGCCGC-CCATGCCGC-CDesign primers
1461408GCGCTGGGC-GCGCTGGGC-GCGCTGGGC-GCDesign primers
1462147CCGGCGGTGCGGTTCCAGGCGGTGCGGTTCCCGGCGGTGCCGTTCCCGGCGGDesign primers
1535762GCCCGAGCCTGA-ACCCGAGCCTGA-ACCCGAGCCTGA-GCCDesign primers
1726414TTCAGACTCAGGTTCAGATTCAGGCTCAGACTCAGGDesign primers
1936765CCCGGCTCCGGCCAG-CCCGGCGCCGGCCAG-CCCGGCGCCGGCCAG-CCCGGCDesign primers
1936857CGGCCGCGCCCG-CCGCCGCGCCCG-CCGCCGCGCCCG-CDesign primers
2179499GC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CC-CCDesign primers
2677985GCGGGGACAGGCACCTCTGCCGCAGCGGGGACAGGCACCCTTGCCGCAGCGGGGACAGGCACCCCTGCCGCAGCGGDesign primers
2746453GCGGCCGGC-GCGGCCGGC-GCGGCCGGCDesign primers
2746647GGCGGCGTC-GGCGGCGTC-GGCGGCGTC-GGCGGCDesign primers
2760706CTGGTG-CTGGTG-CTGGTG-CTGGTGDesign primers
3185053GGTGCG-GGCGCG-GGCGCG-GGCGCG-GGCGCG-GGCGCG-GGDesign primers
3523013GGCGGCGCTTCGGGCGGGGCTTCGGGCGGCGCTTCGGGCGGDesign primers
3604842GCCAAGGCTCCTGCCAAGACTCCTGCCAAGGCTCCCGCCAAGDesign primers
3921204TTTTCCCTTGC-TTTTCGCTTGC-TTTTCGCTTGC-TTTTCDesign primers
3992762CCGGTGGAAACGGCT-CCGGTCGAAACGGCT-CCGGTCGAAACGGCT-CCGGTDesign primers
4479694CCCCTGCCGC-ACCCTGCCGC-ACCCTGCCGC-ACCCTGCCGCDesign primers
4479735TCCTGCCGCA-TCCTGCCGCA-TCCTGCCGCA-TCCTGCDesign primers
4510895AAGAAGGCCGAGGCCGAGAAGAAAGCCGAGGCCGAGAAGAAAGCCGAGGCCGAGAADesign primers
4666894GTAGCCAAGAAAGCCGTCGCCAAGAAAGCCGTAGCCAAGAAGGCCGTDesign primers
5084669CCAGCCGG-CCAGCCGG-CCAGCCGG-CCDesign primers
5311199GCCGGC-GCCGGC-GCCGGC-GCCGGC-GDesign primers

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