Microsatellites /Tandem Repeats database

Genome: Escherichia coli O157:H7 str. Sakai

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
197CATTAGCACCACCATTACCACCACCATCACCACCACCATDesign primers
53265CTGGCGGTGGCGCTGTCGATGGCGDesign primers
64012AATGCTAACCTGGACGGTGCTACCCTGGACGGTGCTACCCTGGACDesign primers
78430GCAGCAACAGCAGCAGCGCCAGCADesign primers
168916TCACCC-TCACCC-TAACCC-TCTCCC-TDesign primers
271417AGAAAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAA-GGTGAADesign primers
487339GGAAAAAATTGCGGAAGAAATTGCGAAAAAAACTGCGGAAATAATTGCGDesign primers
861550AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
861596TGCAAAAGCAGCAGCTGAAAAAGCCGCTGCAGCAAAAGCTGCCGCDesign primers
899046TAATTTTATTTTATTAAATTTAAATDesign primers
1140306GCGTCGCGAGCGTGGCGAACGTCGCGADesign primers
1170330GTAAGGGGCTTCGAAGGGGCTTTTAAGGGGCTTDesign primers
1236502ATTGGGATTGTGATTGGCATTGCGDesign primers
1275726AAAATCGATCATGAAATTGATCATAAAACCGATCATGAAATCGATCATDesign primers
1412754CGGTGAGGGTGACGGTGACGATGADesign primers
1520731TTGCAA-ATGCAA-ATGCAA-ATGCAADesign primers
1544499TGGGACGGGATGGGTTGGTATGGGADesign primers
1803402TAATGATTTTTAATGTGTTTTTGTGATTTTDesign primers
2050139TATTTTTAGTTTTATTTTTATTGTDesign primers
2051834AATAGCAG-AACAGCAG-AACAGCAG-AACAGCAG-AADesign primers
2161417TGGGCCTGC-CGGGCCTGC-CGGGCCTGCDesign primers
2197859TTCTGT-ATCTGT-ATCTTT-ATCTGT-ATCTTT-ATCTGTDesign primers
2198182CACGTAGTGACACGCCGTGACATGTCGTGACADesign primers
2212140TGGGCCTGC-CGGGCCTGC-CGGGCCTGCDesign primers
2502583CGGGATCGGCATCGGCATCGGGTTDesign primers
2690737ACAAAACAACACACAAAAAAACCAAADesign primers
2705221CACGTAGTGACACGCCGTGACATGTCGTGACADesign primers
2862024CAAGAC-CACGAC-CACGAC-CACGAC-CADesign primers
3045751TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
3490385ACAACA-AATAGA-AATAGA-AATAGA-AATAGA-AATAGA-AATAGA-AATAGA-AATAGA-ADesign primers
3491786TTATTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTG-GCTCTGDesign primers
3501273TCGGGTCTGGTTTCGGATCCGGTTTTGGGTCTGGTTTDesign primers
3501323GGATTTGGGTTG-GGATTTGGGTTG-GGATCCGGGTTG-GGDesign primers
3665158GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3892440CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
4216865TT-TT-TG-TT-TT-AT-TT-TT-TG-TT-TT-TA-TT-TT-TTDesign primers
4343148TGCTGGCGCTGGTGCTGGTGCTTGDesign primers
4432480GCCGCCAGC-ACCGCCAGC-ACCGCCAGC-ACCGCCAGCDesign primers
4527872CCCTCACCCTAACCCTCTCCCTCADesign primers
4600773GCAGTTTCAGTTGCACTTGCAGCTGCADesign primers
4781563CGGTGC-AGGTGC-AGGTGC-AGGTGC-AGGTGCDesign primers
4900158AATGCCAATGGCGATGCCAATTCCDesign primers
5061671TTTAGC-CGAAGC-CGAAGC-CGAAGC-CGAAGC-CGAAGC-CGAAGC-CGAAGC-CGAAGCDesign primers
5167106CTCAATGAT-TTCAATGAT-TTCAATGATDesign primers
5227080GGCGGCATG-GGTGGCATG-GGTGGCATG-GGCGGCATGDesign primers
5295255ACCAAAGTGCTATGCAG-TAAAAAGTGCTATGCAG-TAAAAAGTGCTATGCAGDesign primers
5331528ATTAAATAATCATCAGAA-GTTAAATAATCTACAGAA-GTTAAATAATCTACAGAA-GTTAAATAATCTACAGAADesign primers
5331617AGTTAAATAATATACAGG-AGTTAAATAATTCGCAGG-AGTTAAATAATTCGCAGG-AGTTAAATAATTCGCAGG-AGTTAAATAADesign primers
5424376TCGGTACTGTTCTTGGCTTGTTTATCGGTACTGTCATTGACCTGTTTATCGATATTGTCATTGGCTTGTTTATCGGTACTGTCATTGGCTTGTTGCDesign primers
5426055AC-TT-AT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CT-TT-AT-CT-TT-ADesign primers
5477303AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers

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