Microsatellites /Tandem Repeats database

Genome: Escherichia coli O157:H7 str. Sakai

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
203CAC-CAC-CAT-TAC-CAC-CAC-CAT-CAC-CAC-CAC-CAT-CAC-CADesign primers
64014TGCTAACCTGGACGG-TGCTACCCTGGACGG-TGCTACCCTGGACGG-TGCTADesign primers
271420AAAGGT-GAAGGT-GAAGGT-GAAGGT-GAAGGT-GAAGGT-GAAGGT-GAAGGTDesign primers
1520732TGCAAA-TGCAAA-TGCAAA-TGCAAA-TGDesign primers
2051837AGCAGAAC-AGCAGAAC-AGCAGAAC-AGCAGAAC-ADesign primers
2161418GGGCCTGCC-GGGCCTGCC-GGGCCTGCC-GGDesign primers
2212141GGGCCTGCC-GGGCCTGCC-GGGCCTGCC-GGDesign primers
2862027GACCAC-GACCAC-GACCAC-GACCAC-GADesign primers
3490388ACAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-AGAAAT-ADesign primers
3491788ATTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGC-TCTGGCDesign primers
4432481CCGCCAGCA-CCGCCAGCA-CCGCCAGCA-CCGCCAGCADesign primers
4781564GGTGCA-GGTGCA-GGTGCA-GGTGCA-GGTGCA-GGTDesign primers
5061673TAGCCG-AAGCCG-AAGCCG-AAGCCG-AAGCCG-AAGCCG-AAGCCG-AAGCCGDesign primers
5295257CAAAGTGCTATGCAGTA-AAAAGTGCTATGCAGTA-AAAAGTGCTATGCAGTADesign primers
5331540TCAGAAGTTAAATAATCT-ACAGAAGTTAAATAATCT-ACAGAAGTTAAATAATCTDesign primers
5331630ACAGGAGTTAAATAATTC-GCAGGAGTTAAATAATTC-GCAGGAGTTAAATAATTCDesign primers
5426058TA-TA-TC-TT-TA-TC-TT-TA-TC-TT-TA-TC-TT-TA-TC-TT-TA-TC-TT-TA-TC-TT-TA-TC-TDesign primers

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