Microsatellites database

Microsatellites /Tandem Repeats database

Genome: Deinococcus radiodurans R1

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | **0.2**
Position	Sequence
32477	CGGTGCGGGTGCCGGGGCCGGAGC	Design primers
116788	TCTTAGACTCTCAGACCCTTAGAC	Design primers
194022	GTCGGC-GTCGGC-GTGGGC-GTGGGC-GT	Design primers
319942	GCCGCCGACGCCGCCGACGCCGCG	Design primers
328597	AGCTGCCAGCCCCCGAGCTATCAGCCTCCGAGCTTCCAACCCCCGA	Design primers
431791	GAGCTG-GGGCTG-GGGCTG-GCGCTG	Design primers
448150	TGGCCGGTCTGAGTC-TGGCCGGTCTGAGTC-TGGCCGCTCTGGGCC	Design primers
516559	GCAGCAGCGCCAGCAGCGGCAACAGCG	Design primers
516915	GCCAGCGCCCGCGCCAGCGCCACC	Design primers
553134	CTGCCGGTACCAGTGCCGGTGCCAGTGCCGGTACCAGTGCCGGTACCA	Design primers
563098	CTGCCCAGTAACGCC-CAGCCCAGTAACGCC-CAGCCCGGTGACGCC-CT	Design primers
567505	GCCCACCCCACCATGCCCACCCCAGCATGCCCGGCCCACCATGCCC	Design primers
619842	GGCGACATGGGCGGCATGGGCGGCATGG	Design primers
752898	CCGGGCTGGTGAAATAGTGGGGACTGGTGAAATAGTGGGGGCTGGTGAAGTAGT	Design primers
777621	GCTTCGGCGGCTTCGGTGACTTCGGCGG	Design primers
851057	AGG-CGG-CGG-CGG-AGG-TGG-GGG-CGG	Design primers
855695	GTGGGTGTCGGTGTAGGTGTGGATG	Design primers
869242	AGCCCCAACCCCAGCCCCAACCCCAGGCCC	Design primers
941651	AGC-AGC-GGC-AGC-ACC-AGC-AGC-GGC-AGC-A	Design primers
980897	TCAACCATCAACCGTCCACCATCA	Design primers
992797	ACTTCGAGTTCGGCTTCGATTTCG	Design primers
1005040	GTTTTTCTATGTTGTTCTCTGTTTTTCTGTG	Design primers
1096608	GCGGGGCGGCGCGGGGCGCGTCGGG	Design primers
1118435	AAACGCCGCTCAGCGCGTCCTGGG-GGCGGCCGCTCAGCGCGTCCTGGG-GGCGGCCGCTCAGCGCGTCCTGGG	Design primers
1133211	CCCCAGGGTCCCGTCGGTCCTCAGGGCCCCGTCGGCCCCCAGGGTCCTGCTGGTCC	Design primers
1133300	CACCACCACGACGACCACCAACACCACCAC	Design primers
1158677	GTGCTGGGGCTGGTGCTGGTGGTGG	Design primers
1224263	ATCAGC-ATCAGC-AGCAGC-AGCAGC-A	Design primers
1299463	GGGGTCTGGGCGGCGGTCTGGGCCGGGGTCGGAGCGGG	Design primers
1313398	TGGGGCTGGTGCTGGGGCTGCGGC	Design primers
1407957	GGGTCGGTGGCCTTCTGGTCAGTCGCCTTCTGGTCGGCGGCTTTCGGGTC	Design primers
1504562	GCCCC-GCCCC-GCGCC-GCCGC-GCCGC	Design primers
1513385	GGGTCTGAGGGTCTAAGAGTCTGAGGGTC	Design primers
1513457	GACCTTTAGACCTTTTGACCCTTAGAC	Design primers
1516967	CTCTTAGACCCTTAGACTCTTCGAC	Design primers
1540967	GCCGCCGCCGTCGCCACCGCCGCG	Design primers
1588240	CCCAGCACCAGCCCCAGCACCAGC	Design primers
1599669	CAGGCGAATGGACCCGGCGAGTGGACCCGGCGGATGGACCA	Design primers
1636544	TCCGGGGGCGGCTACTCGGGCGGCGGATACTCCGGCGGGGGCTAC	Design primers
1648590	ACCGCGCCGCGCCGCACGGCACCGG	Design primers
1650832	ACCTCTACGCCAACTTCTACGCCTACCAGTACGCCA	Design primers
1657452	GCACCG-GCACCG-GCCCCG-CCACCG	Design primers
1665842	GGCGCTGGGGCTGGCGCGGGCGCA	Design primers
1686776	GGCGGGGGCGCGGGCTGGGGCTGG	Design primers
1760587	CATCAACAATCAACAATCAACCATCCAC	Design primers
1782796	GTTGCCGTTGACGTTGGCATTGCC	Design primers
1846750	GCTTTTCACTGAGCTCTTTTCGCTGAGCTCTTTTCGCTGAGC	Design primers
1879280	CGAGCAGCGCGAGCACCGCCAGCAGCG	Design primers
1895850	GGCGCCCCGCGCCCGGCCCCCGGCG	Design primers
1978669	CCGCGCTGACCCACGCCGACCCGCGCTGCG	Design primers
2011137	TGGTGGTGTTGGTGGTCGTCGTGGTGGCGG	Design primers
2017169	AGACGCGGCAGGGGCAGACGCGGCAGGGTTAGGCGCGGCGGGCGC	Design primers
2020175	TGAACCCACTGCACAGAACCCACTGGACAGAACCCACTGCAC	Design primers
2056638	AGGGCGTGCTCGACCAGGGCATGTTCGGCCAGTGGGTGCTCGACCAGTGGGTGCTCGACC	Design primers
2073482	CCGTTTGACCGTTCGACCCTTTGACTGTTTGAC	Design primers
2081718	CGCTGCCGGGTCTGCCGGGGCCGTGTCTGCCGGGGCCGTGTCTGCCG	Design primers
2084385	CCGCCCGTTGCCGCGCGTGGCCGCCCACTGC	Design primers
2093132	CGTGCCCATGCCCGCGCCCTTGCCC	Design primers
2101204	CCCCTGCCCCCGCCCCGGCCCCGG	Design primers
2115871	GGTCTGAGGGTCTCAGCGTCTGAGGGTCT	Design primers
2190347	CTTAGACCCTCAGACCTTTAGACCCTTTGACC	Design primers
2268178	TGTCATCGGTCACAGGCGTCACCGGGCACAGGCGTCACCAGTCACAGG	Design primers
2290054	AACAGGCAGCCCAGCAAAAAGCAGCCCAGCAAAAGGCCGCTCAGCAA	Design primers
2290443	CCTGCGCGACCTGCTCCTGCGCGGCCTTCTCCTGCACAGCCTGCTCCT	Design primers
2305595	CCCATGCTCATGCCCAGGCCGATG	Design primers
2334074	AGGTCGGTCGGCTGCGCGTCGGTGGGCTGCGCGTCGGTAGGCTGC	Design primers
2342457	GGTGCCGGTGGTGTCGGTAGTGCCGGTG	Design primers
2349714	CGGGGCGGCGCAGGGCGTGGCGGCGC	Design primers
2387008	TTGGGTGTCCTGGGGCTGGGTGTCGTGCGGTTGGGTGTCAGGGTG	Design primers
2403502	ACCCAACCCCGCTCAACACAACCACGTTCAACCCAATCCCGTTCAAC	Design primers
2412358	GCCCAGACCGCCAGCACCCAGACCCCCGGCACTCAGACGGCCAGCGCCC	Design primers
2418236	GGCGCTGCTGCTGTCGCTGCTGGTGGCGCCGCTGCTGCTGCTGCTGCT	Design primers
2452043	GGATGGG-AGATGGG-TGATGGG-TGATGGG-G	Design primers
2496204	GGGCTGGTGCTGGCGCTGGGGCTG	Design primers
2539204	GCTGCTGCTCCTGCTGCCGCTGGT	Design primers
2603982	CCAGTTGGGGCATGACCGGTTGAAGCATGAACAGTGGGGGTATGA	Design primers
2641529	CCGCACCGGCACCGGCACCCGCTC	Design primers
Search your sequence for microsatellites

This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.

Info

Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2

Position

Sequence

32477

CGGTGCGGGTGCCGGGGCCGGAGC