Microsatellites /Tandem Repeats database

Genome: Escherichia coli K-12 substr. W3110

Search your sequence for microsatellites
This database allows retrieval of precomputed tandem repeats from the selected genome. It also allows to easily design primers for amplification of a DNA fragment containing the tandem repeat. The primers may be used for PCR simulation with a specific genome or with all genomes within the selected genera.
Info
Percentaje of mismatches allowed within the tandem repeats: 0 | 0.1 | 0.2
 
PositionSequence 
59050GCGTGCTACCCCGGA-CGGTGCTACCCCGGA-CGGTGCTAACCCGGADesign primers
59184TTGATACTAAAGGAGTTGCTACTGAAGAAGTTGCTACTAAAAAAGDesign primers
73611GCAGCAACAGCAGCAGCGCCAGCADesign primers
164594TCACCC-TCACCC-TAACCC-TCTCCCDesign primers
771268AGTTAATTATAATATAATTATAAGTTAACTAAADesign primers
777547AGAAAGCAGCGGCAGAAAAAGCCGCCGCAGACAAAAAAGCGGCAGDesign primers
1058571ATTGGGATTGTGATTGGCATTGCGDesign primers
1200012AAATGAAA-TAATGAAA-TAATGAAADesign primers
1200037GATGAAAT-GATGAAAT-GATGAAAT-GATGAAAT-GATGAAATDesign primers
1902468CGGGATCGGCATCGGCATCGGGTTDesign primers
2006222CCA-CCA-GCA-CCA-CCA-GCA-GCA-CCADesign primers
2316098TTATATGCCTTTATTTGCTTTTTTATGCCADesign primers
2478900GACGCATCAAATTTTGACGGGTCAGATTTTGATGCGTCAGATTTTDesign primers
2764062CAACCGCA-CTATGGCA-CTATGGCA-CTATGGCA-CTATGGCA-CTATGGCADesign primers
2777764TGGATTTGGGTCTGGCTTTGGATCGGGTTTTGGGTCDesign primers
2941414GTTGTGATGTTGTGTTGTTGTGTTDesign primers
3150739CCTTTGCTTTCTTTTCCTTGCGTTTDesign primers
3531760TGGTGTTGATGTTGGTTTTGATGTDesign primers
3633537TTATATATTTTCATTTATTTTAATAAATTTDesign primers
3859362TGAGGGAGAGGGTTAGGGTGAGGGDesign primers
3888436TTATATATAATTTTATATATTACTATATAADesign primers
4033271TAACGCGCTAACGCCCTGACGCGCDesign primers
4123183TTCTGAACGTTCTGAGCGTACTGAACGDesign primers
4143426AA-AA-AA-TA-AA-AA-CA-AA-AA-AT-AA-AA-CA-AA-AADesign primers
4327479GCGCCAGC-ACGCCAGC-ACGCCAGCDesign primers
4377315ATGGGCGGCATGGGTGGCATGGGCGGCDesign primers
4480682TCAGGAGTTAAATAATCTACAGAAATTAAATAATCTACAGAAGTTAAATAATCTDesign primers
4480760GTTAAATAATCCTCAGGAGTTAAATAATCCGCAGAATTTAAATGATTCTCAGGAGTTAAATAACTCGCAGGAATTAAATAGTCCACAGGAGTTAAATGATCCGCAGGAGTTAAATAATTCTCAGGADesign primers
4624142AAGCGGCGAAAGCGGTGAAAGCGGCAADesign primers
4626411AATCTATTCAAGTATCTATTCACGAATCTATTCATTDesign primers

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